Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_J03
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0525 + 15002846-15003048,15004814-15004937,15005458-150054...    29   5.0  
08_02_0076 + 11967606-11967905,11969125-11969223,11969813-119741...    28   8.8  

>05_03_0525 + 15002846-15003048,15004814-15004937,15005458-15005481,
            15005995-15006779,15006839-15006873,15007108-15007601,
            15007951-15008452,15008725-15008867,15009523-15009576,
            15010255-15010362,15010529-15010705,15011169-15011186,
            15011561-15011938,15012125-15012310,15012356-15013205,
            15013362-15013402,15013491-15013868,15014195-15014236,
            15014528-15014678,15015621-15015670
          Length = 1580

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 545  WSRYQAINSKKKKKLNAMHRKLGAII 622
            WS ++ ++SKK+ +L   HRKL A++
Sbjct: 1369 WSAFERVHSKKRTRLG--HRKLNALV 1392


>08_02_0076 + 11967606-11967905,11969125-11969223,11969813-11974124,
            11974177-11974211
          Length = 1581

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +3

Query: 243  PRQYFTVLRFVRLIMFTNRQNQKNNRIMHYKIHDNYERFFSS*NIRL*NVSSCCGRSIQG 422
            P + FT L  ++ I FT   +  N+ IMH+       RF S   I + N  +   R++ G
Sbjct: 1176 PPRCFTSLESLQ-ISFTTAPSDANS-IMHFTSKKGLGRFVSLKKIVIENCPTLLSRALSG 1233

Query: 423  GIS 431
            G S
Sbjct: 1234 GAS 1236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,593,181
Number of Sequences: 37544
Number of extensions: 299583
Number of successful extensions: 524
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)