Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_J03
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100655-7|ABO16448.1|  375|Caenorhabditis elegans Hypothetical ...    30   1.5  
AF100655-5|ABO16449.1|  375|Caenorhabditis elegans Hypothetical ...    30   1.5  
AF045643-1|AAC02595.1|  338|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z82076-2|CAB04938.1|  360|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ...    28   5.9  
AF100655-9|ABO16446.1|  375|Caenorhabditis elegans Hypothetical ...    28   7.8  
AF100655-3|ABO16450.1|  375|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AF100655-7|ABO16448.1|  375|Caenorhabditis elegans Hypothetical
           protein C44C8.2 protein.
          Length = 375

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 261 VLRFVRLIMFTNRQNQKNNRIMHYKIHDNYERFFSS*NI 377
           +L F  ++ F N      N++ H ++H +++RFF   N+
Sbjct: 254 ILIFQSIVFFDNDMLNNLNKLRHKRVHLSFDRFFELQNV 292


>AF100655-5|ABO16449.1|  375|Caenorhabditis elegans Hypothetical
           protein C44C8.3 protein.
          Length = 375

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 261 VLRFVRLIMFTNRQNQKNNRIMHYKIHDNYERFFSS*NI 377
           +L F  ++ F N      N++ H ++H +++RFF   N+
Sbjct: 254 ILIFQSIVFFDNDMLNNLNKLRHKRVHLSFDRFFELQNV 292


>AF045643-1|AAC02595.1|  338|Caenorhabditis elegans Hypothetical
           protein F58H7.8 protein.
          Length = 338

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 261 VLRFVRLIMFTNRQNQKNNRIMHYKIHDNYERFFSS*NI 377
           +L F  ++ F N      N++ H ++H +++RFF   N+
Sbjct: 254 ILIFQSIVFFDNDMLNNLNKLRHKRVHLSFDRFFELQNV 292


>Z82076-2|CAB04938.1|  360|Caenorhabditis elegans Hypothetical
           protein W07G1.6 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 124 YLYFNTFHLLTLTVNTYFSLIIKM 195
           YL FN  +LL L ++ YF++I+ M
Sbjct: 28  YLIFNVVYLLLLFISAYFTVILVM 51


>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
            protein ZC123.3 protein.
          Length = 1623

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 643  ISGSLEGSIPASPSCNTTSSRRFA*ET 723
            +S S+    P++PSCNT+SS R A  T
Sbjct: 1018 MSASVNPMTPSTPSCNTSSSGRRANRT 1044


>AF100655-9|ABO16446.1|  375|Caenorhabditis elegans Hypothetical
           protein C44C8.1 protein.
          Length = 375

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 261 VLRFVRLIMFTNRQNQKNNRIMHYKIHDNYERFFSS*NI 377
           +L F  +  F N      N++ H ++H +++RFF   N+
Sbjct: 254 ILIFQSIDFFDNDMLNNLNKLRHKRVHLSFDRFFELQNV 292


>AF100655-3|ABO16450.1|  375|Caenorhabditis elegans Hypothetical
           protein C44C8.4 protein.
          Length = 375

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 261 VLRFVRLIMFTNRQNQKNNRIMHYKIHDNYERFFSS*NI 377
           +L F  +  F N      N++ H ++H +++RFF   N+
Sbjct: 254 ILIFQSIDFFDNDMLNNLNKLRHKRVHLSFDRFFELQNV 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,946,009
Number of Sequences: 27780
Number of extensions: 289220
Number of successful extensions: 549
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)