Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_J01
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.3  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.0  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    25   9.3  

>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = -2

Query: 263 QHSPYNLGKMRICLFSHXDYIQYYLYK*PLVQEYLEFL*RHLFSTIAKFEKNVNQYIINQ 84
           Q S +N   ++I LF +     +Y+YK  L  EY+ FL    F  I +    V+  +++ 
Sbjct: 21  QVSCFNPILLKIILFLNTIVCIFYVYKIALCNEYIRFL-AKCFLYILRCMSTVS--LLSS 77

Query: 83  TCLKSCFLLYSN 48
               +C   YSN
Sbjct: 78  AHKMNCCNFYSN 89


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 419 KPNVYXYIFFFLEKYTCRDS*TXLYIFKYVN 511
           K ++Y YI+FF   + C       Y+FKY++
Sbjct: 76  KFSIYIYIYFFFYSFLCSP-----YLFKYIS 101


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 19  FYVHTYI*VSLLYNKKQLLRHV*LIIY 99
           FY H  + V  L+NK+Q L+   L+I+
Sbjct: 115 FYAHAILFVMELFNKEQYLQSSKLLIF 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,131,488
Number of Sequences: 5004
Number of extensions: 37373
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)