Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_I23
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    27   2.1  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    26   4.9  
SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein ...    26   6.4  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   6.4  

>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = +3

Query: 414 ASLSKLLTQPGKLRYKPVFSRTNRRSSSVVKPWESSNGIGSFLPLRKSLTTGKLS 578
           +SL   L  P K  ++PV  R    SS +VKP  SS+   S   L  SL + +L+
Sbjct: 429 SSLLTPLALPNKKAFQPVKFRVPSFSSPLVKPASSSSFGRSHSHLGTSLRSNELN 483


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 230 NFLDSLMFCIDKLIAFFNYFLHNGLVDFC 316
           +F D L+ CI K +  FNY L     D C
Sbjct: 451 SFRDGLLQCIFKSLGVFNYELKEDNDDLC 479


>SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein
           Uhp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 202

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -2

Query: 610 EVLAKKYGATKDNFPVVRLFLKGKNDPIPFDDSQGFTTD--ELRRFVRENTGLYL 452
           E+L K + A K N+PVV L +  + D   F     + T   + R F     GL++
Sbjct: 48  EILEKMHAAPKPNYPVVTLDVLTQYDAFLFGYPTRYGTPPAQFRTFWDSTGGLWV 102


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -2

Query: 733 DVAFPYGDXHDAFVALAKDSKDVDELLIAEVGVKDYGXKDNEVL 602
           D+A  Y     +   L KDSK +  L   ++ V++    +++V+
Sbjct: 173 DIAMLYNSSRPSLAVLYKDSKSIVHLSTYKINVREQEIDEDDVV 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,712
Number of Sequences: 5004
Number of extensions: 52419
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)