Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_I22
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   3.9  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    25   9.0  
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    25   9.0  

>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = -3

Query: 759 FCCPRXQILR--PLSLRCPGTACLPWKRPCHNSPSRTGTFLSRSTERSHHSP 610
           F CP    L   P++L C GT C    R  ++S S      SR    +H  P
Sbjct: 17  FICPGCNCLPDWPVTLPCGGTVCRKCFRNAYSSESSGKVSPSRCCFYNHKKP 68


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 693 PWKRPCHNSPSRTGTFLSRSTERSHHSPRVH*GSRYSITVN 571
           PW+    ++  R G  LSR  + S    R+   SRY +  N
Sbjct: 474 PWRAAPSSTLYRPGATLSRQVDASAELERITSESRYDVLGN 514


>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 684 RPCHNSPSRTGTFLSRSTERSHHSPRVH*GSRYSITVNNLF 562
           R CHNS +R+  F+S     +     V+    Y+  +NN+F
Sbjct: 131 RCCHNSFARSDPFISEEVRAATDEDEVYHFIAYT-NINNVF 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,862,686
Number of Sequences: 5004
Number of extensions: 53826
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)