Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_I16
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    84   2e-17
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    52   1e-07
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    26   7.0  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 1/172 (0%)
 Frame = -3

Query: 768 RVWTDDDLVAQXVLFFVAGFETVSSAMTFLLHELALNPEVQEKLVEEIQXXEKNN-NGKF 592
           R ++D+++    + F  A  +  SSAMT+L   LA +P+V +K+ EE     K + +   
Sbjct: 302 REFSDEEISLTFLSFLFASQDATSSAMTWLFQLLADHPDVLQKVREEQLRIRKGDIDVPL 361

Query: 591 DYNSIQNMVYLDMVVSEVLRLWPPVIALDRICVKDYNLGKPNDKSKEDFIIRKDVAVGIP 412
             + ++ M Y   VV E LRL PPV+ +     K + +         D+ + KD  V   
Sbjct: 362 SLDLMEKMTYTRAVVKECLRLRPPVLMVPYRVKKAFPI-------TPDYTVPKDAMVIPT 414

Query: 411 VWGLHRDPEFFPNPLKFNPERFSEENKHNIKPFSYMPFGLGPRNCIGSRFAL 256
           ++G   D + +P P  FNP+R++        P ++M FG GP  C+G R+A+
Sbjct: 415 LYGALHDSKVYPEPETFNPDRWAPNGLAEQSPKNWMVFGNGPHVCLGQRYAV 466


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 16/182 (8%)
 Frame = -3

Query: 756 DDDLVAQXVLFFVAGFETVSSAMTFLLHELALNPEVQEKLVEEIQXXEKNNNGKFDYNSI 577
           + ++    +   +AG  T ++ + ++L  L   PE+ E L EE Q      N +  ++  
Sbjct: 275 EHEIAGMMIALLMAGQHTSAATIVWVLALLGSKPEIIEMLWEE-QKRVVGENLELKFDQY 333

Query: 576 QNMVYLDMVVSEVLRLWPPVIALDRICVKDYNLGKPNDKSKEDFIIRKDVAVGIPVWGLH 397
           ++M  L+ V+ E LRL PP+ +  R   +D  L  P  K     I   +  +  P  GL 
Sbjct: 334 KDMPLLNYVIQETLRLHPPIHSHMRKVKRD--LPVPGSKI---VIPANNYLLAAP--GLT 386

Query: 396 R-DPEFFPNPLKFNPERFSE-----ENKHNIK----------PFSYMPFGLGPRNCIGSR 265
             + E+F +   F+P+R+++     EN   I              Y+PFG G   CIG +
Sbjct: 387 ATEEEYFTHATDFDPKRWNDRVNEDENAEQIDYGYGLVTKGAASPYLPFGAGRHRCIGEQ 446

Query: 264 FA 259
           FA
Sbjct: 447 FA 448


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1201

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = -3

Query: 639  LVEEIQXXEKNNNGKFDYNSIQNMV--YLDMVVSEVLRLWPPVIALDRICVKDYNLGKPN 466
            L +++   ++ N+ K   N IQ  +   L+M+ S   +   P+I L+ I + + N     
Sbjct: 883  LTDKVNRRQRKNDKKIK-NKIQVKLSSILEMLRSRYKKFKKPIIDLNDIYIDESNERVVK 941

Query: 465  DKSKEDF 445
             KSK++F
Sbjct: 942  GKSKDNF 948


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,012,291
Number of Sequences: 5004
Number of extensions: 61193
Number of successful extensions: 166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)