Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_I14
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    90   2e-19
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...    28   1.1  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    28   1.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.4  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    26   4.5  

>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 90.2 bits (214), Expect = 2e-19
 Identities = 55/197 (27%), Positives = 97/197 (49%), Gaps = 4/197 (2%)
 Frame = -3

Query: 690 VLCLSDEVYEWMVYEPKQHIRIASF-PGMWERTITVGSAGKTFSVTGWKIGWAYGPADLM 514
           +L +SDEVY+ + + P   +R+A+  P +++  +TVGS GKTF  TGW++GW  G   L+
Sbjct: 211 LLVVSDEVYDRLSFVP--FVRLATLRPELFKHVVTVGSGGKTFGCTGWRVGWLIGDESLI 268

Query: 513 RNLQVVHQNCVYTCCTPVEEAVARSFEYELARRDSPECYFYSLARELRPKRDYLMKILKE 334
           +     H    +   +P +EA+A +F  E  + +    Y+       + + + L K   +
Sbjct: 269 KYSAAAHTRICFAVNSPCQEALAIAFG-EAEKHN----YYEEYKSSYKKRFEILAKAFDQ 323

Query: 333 NGFKPTLPEAGYFVVADWTDLE--KKIDLSSEL-XXXXXXXXXXXXXKEAGVLAIPPSAF 163
                T+P+  Y+ +A+++ L+  K      E+              KE GV  IPP+ F
Sbjct: 324 LEIPYTIPDGSYYTMANFSKLKLPKDYPFPEEIANRPRDFKLCYWILKEIGVATIPPTEF 383

Query: 162 YSEAHKHLGETFARFCF 112
           Y++    + E + RF F
Sbjct: 384 YTDEDAPVAENYLRFAF 400


>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 354 LMKILKENGFKPTLPEAGYFVVADWTDLEKKID 256
           +M+ILK NG  P LPE  Y ++     + K ++
Sbjct: 71  IMRILKANGLAPELPEDLYNLIKKAVSVRKHLE 103


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 494 CTTCRFLIRSAGPYAHPIFHPVTEN 568
           C  C    +  GP +H  FH +TEN
Sbjct: 89  CLVCGRYFQGRGPSSHAYFHALTEN 113


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -1

Query: 317  LYPRPGTLSWPIGLTWKRRSTYRANWTNTKITSSQRNSLKR 195
            ++   G  SW  GL W++ S +  +    K+T++QR+ L +
Sbjct: 1513 MFKATGFPSWE-GLFWEKASGFEESMKFKKLTNAQRSGLNQ 1552


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 539 HPIFHPVTENVFPADPTVMVLSHMPGKDAIR 631
           H  F PV    +   PT+ +LS + G+DA++
Sbjct: 223 HAKFSPVATASYRLLPTIHILSPIEGEDAVK 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,653
Number of Sequences: 5004
Number of extensions: 48369
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)