Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_I14
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    27   0.22 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    27   0.22 
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    27   0.22 
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    27   0.22 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.52 
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   8.4  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   8.4  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 224 TSSQRNSLKR-RAYSPYRRAPSTLKHTNTWGRRSRD 120
           TS +R S  R R    Y+   S  K+  TW  RSRD
Sbjct: 34  TSRKRYSRSREREQKSYKNENSYRKYRETWKERSRD 69


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 224 TSSQRNSLKR-RAYSPYRRAPSTLKHTNTWGRRSRD 120
           TS +R S  R R    Y+   S  K+  TW  RSRD
Sbjct: 34  TSRKRYSRSREREQKSYKNENSYRKYRETWKERSRD 69


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 224 TSSQRNSLKR-RAYSPYRRAPSTLKHTNTWGRRSRD 120
           TS +R S  R R    Y+   S  K+  TW  RSRD
Sbjct: 34  TSRKRYSRSREREQKSYKNENSYRKYRETWKERSRD 69


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 224 TSSQRNSLKR-RAYSPYRRAPSTLKHTNTWGRRSRD 120
           TS +R S  R R    Y+   S  K+  TW  RSRD
Sbjct: 34  TSRKRYSRSREREQKSYKNENSYRKYRETWKERSRD 69


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 601 EDHHRRVRGEDVLRHRVEDRVGVRTSRPDE 512
           +DHHR  + +   + R + R   R  RPDE
Sbjct: 157 QDHHRPYQQQQQQQQRQQQRQEERRLRPDE 186


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 127 REILLYKERRKSRTNRESAKG 65
           RE   YK  R+ R  RE++KG
Sbjct: 267 REQNSYKNEREYRKYRETSKG 287


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 127 REILLYKERRKSRTNRESAKG 65
           RE   YK  R+ R  RE++KG
Sbjct: 278 REQNSYKNEREYRKYRETSKG 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,805
Number of Sequences: 438
Number of extensions: 3200
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)