Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_I08
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...   144   2e-35
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc...    27   2.2  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    27   2.9  
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa...    27   2.9  
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple...    27   3.8  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    26   5.0  

>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score =  144 bits (348), Expect = 2e-35
 Identities = 79/222 (35%), Positives = 131/222 (59%), Gaps = 11/222 (4%)
 Frame = -1

Query: 749 IHGVXFDFIPDT--KGVPLIADMSSXIMSKKVDVSKFGVIYAGAQKNIGTSGVALVIVRE 576
           +HGV F+  P    KG   + D+SS  +S+K+D +K  +I+AGAQKN G +G+ +V VR+
Sbjct: 170 VHGVEFNEPPTNIPKGAIRVCDVSSNFISRKIDFTKHDIIFAGAQKNAGPAGITVVFVRD 229

Query: 575 DLLNQA---------LPTCPSLLDWTANYKQNSILNTPPMFAIYIMGRVLQWIQRNGGLE 423
            +L +          +P  P++ D+      +S+ NT P+  ++ +   L+++  +GGL 
Sbjct: 230 SVLARPTPAELHKLNIPVSPTVSDYKIMADNHSLYNTLPVATLHAINLGLEYMLEHGGLV 289

Query: 422 GMSQLATKKASLIYNTIEQSNGFYYAPVAKNVRSKMNVPFRIGCPGDDALEKEFLKGAET 243
            +   + +K+ L+Y+T+++ +  Y + V    RS+MNV FRI       LE EFL  AE 
Sbjct: 290 ALEASSIEKSKLLYDTLDKHD-LYISVVEPAARSRMNVTFRIE---PQELESEFLAEAEK 345

Query: 242 LGLIQLKGHRDVGGIRASIYNAVTLEEVQAXVQYMEECXKKH 117
             L+QLKG+R VGGIRAS+YNA+++E+ +  +  +E   K H
Sbjct: 346 HHLVQLKGYRSVGGIRASLYNAISVEQTRRLIDLLESFAKAH 387


>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
           Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 242 KSQHPSRILFLRHHHQGNQF*MAHSFYCE 328
           K ++P+RI  LR +H+  Q    + FY E
Sbjct: 117 KLRYPNRITILRGNHESRQITQVYGFYDE 145


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 637  ITPNFETSTFFDIMXEDISAIKGT 708
            ITPN  TS FFD++ +D     G+
Sbjct: 1438 ITPNLLTSQFFDVLTKDALYTNGS 1461


>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
           Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 242 KSQHPSRILFLRHHHQGNQF*MAHSFYCE 328
           K ++P RI  LR +H+  Q    + FY E
Sbjct: 104 KIRYPQRITILRGNHESRQITQVYGFYDE 132


>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
           subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 313

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 58  SKSHPKSLSCLSQFXNXSLXCFX*HSSMY 144
           SKS PK + CL +F      CF  H  +Y
Sbjct: 224 SKSEPKGMECLDKF-QAMQACFQKHPEIY 251


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 574 SSLTMTSATPDVPIFF*APAYITPNFETSTF 666
           + L++ S+TP  P+    P Y TP+   S F
Sbjct: 427 NQLSIPSSTPSTPLSDNGPTYSTPHSSLSNF 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,089,435
Number of Sequences: 5004
Number of extensions: 64732
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)