Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_I05
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             27   2.0  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    27   2.6  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    26   4.5  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   6.0  

>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +2

Query: 551 NRWYFAVEGWKILSSFGRSQRALQFL 628
           NRW+ A+  W+++++F  ++  L  L
Sbjct: 145 NRWFAAINKWQVMTAFELNEENLDLL 170


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = -2

Query: 424 VTRLFITLNPNDFNVNYENITDRYVHLVIFNSKMCPWNVYNSIRSVSLLLIAIYFCLDFN 245
           ++RL + L+ +D   N  ++ D  +   IFNS      +   +   SLL +  Y+   F 
Sbjct: 355 ISRLVLRLSQSDGTSNDPSVQDNLICASIFNSSKMELLLKKQLLP-SLLQLETYY---FR 410

Query: 244 NSFQSLFKYEIYY 206
            S ++  + E YY
Sbjct: 411 RSIETSLELEEYY 423


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 262 FCLDFNNSFQSLFKYEIYYYTSINTKN 182
           F +DFNN  +S+F+ +I    +IN K+
Sbjct: 230 FDIDFNNETESIFRKKIRSPNTINQKH 256


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 277 LIAIYFCLDFNNSFQSLFKYEIYYYTSINTKN 182
           L A Y   +  N   S+F YE +Y   + TKN
Sbjct: 331 LSADYDLGELENELMSIFDYEHFYLVQLLTKN 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,310
Number of Sequences: 5004
Number of extensions: 57908
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)