Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_H23
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    27   1.7  
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    27   1.7  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    27   2.2  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   5.2  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    26   5.2  
SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.8  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   6.8  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   9.0  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 595 NNNYLHRTTNNESLYKLLGGFFSYYGTFDFE--ENIICPYLGF 473
           N  Y+HRT  N  +Y++  G  +   + DF+  E  I P  GF
Sbjct: 269 NAGYMHRTQLNSKIYRIGAGDDAKNASTDFDATEKRITPMGGF 311


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 595 NNNYLHRTTNNESLYKLLGGFFSYYGTFDFE--ENIICPYLGF 473
           N  Y+HRT  N  +Y++  G  +   + DF+  E  I P  GF
Sbjct: 269 NAGYMHRTQLNSKIYRIGAGDDAKNASTDFDATEKRITPMGGF 311


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -2

Query: 514 FDFEENIICPYLGFPIRKKSFDLFLTKFSLYQHNVAAEVCKPLRLDTPLCI 362
           F FE+  +  Y+   +   S+++  T  S+YQ  +   V K + LDTP  +
Sbjct: 275 FIFEDLKVAFYVLPDLTPPSYNIAKTFASIYQECLVGLVTKAVSLDTPAAV 325


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -2

Query: 289 LFKSAAETFHKDKKPNFLREILQKNTENIYQEVKYKHRKTKFLHNKVQKVQ 137
           L KS  + F  ++K ++L ++   N     Q VK    + +FL N ++KVQ
Sbjct: 215 LQKSEDKNFKLEEKVDYLSKV---NDVEQSQNVKVFTERIRFLENALEKVQ 262


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -3

Query: 390 HCDWTLPYVYKIRLITPEIALSIYIPN**PE*LICSNLL 274
           H +W L ++ +++L+TP +   I +    P  ++CS  +
Sbjct: 248 HTEWNLEHIPRLKLVTPALMRPIRMLFTQPIVILCSTYM 286


>SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 319 YPKLVTRIVDLFKSAAETFHKDKKPNFLREILQKNTENI 203
           +PK+  +I  L    AE   + K+PN L  I +   E +
Sbjct: 49  FPKVERKIQSLLDELAEVLFQSKQPNDLTRIRKAIAEQL 87


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 363  IHKGVSNRNGLHTSAATLC*YKENFVKNKSKLFFLIGNPKYGHI 494
            +H  + +  GL  +  T+C    +   N+ KLF   G+PK+ H+
Sbjct: 1377 LHGILCDDMGLGKTLQTICIVASDHY-NRQKLFEESGSPKFAHV 1419


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 276 LRKHFIRIKNLIS*EKFCRKI 214
           L K + RIK LI+ E+FC+ +
Sbjct: 19  LDKRYKRIKRLINNEQFCKNV 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,416,191
Number of Sequences: 5004
Number of extensions: 52480
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)