Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_H23
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    27   0.15 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.46 
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    24   1.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   1.4  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    24   1.4  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    24   1.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.9  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 616 DYWXTNFNNNYLHRTTNNESLYKLLGGFFSYYGTFDFEE 500
           +Y   N+NNNY +   NN + YK L     YY   + E+
Sbjct: 328 NYNNNNYNNNYNNYNNNNYNNYKKL-----YYNIINIEQ 361


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 448  SQSFFFLSEILNMDILYFLRNQKFRSMKRI 537
            SQ  F LSEI N+D+   + N K    K+I
Sbjct: 1353 SQGLFSLSEIDNLDVSLDVSNPKNAGKKKI 1382


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 601 NFNNNYLHRTTNNESLYKLLGGFFSYYGTFDFEE 500
           N+NNNY +   N  + YK L     YY   + E+
Sbjct: 93  NYNNNYNNYNNNYNTNYKKL----QYYNIINIEQ 122


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -2

Query: 616 DYWXTNFNNNYLHRTTNNESLYKLLGGFFSYYGTFDFEENIIC 488
           D +  N  N++LH  T    L +L G     YG   F   + C
Sbjct: 120 DTFFANDKNSFLHDVTERNKLVRLSGDGSVTYG-MRFTTTLAC 161


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -2

Query: 610 WXTNFNNNYLHRTTNN-ESLYK 548
           +  N+NNNY +   NN + LYK
Sbjct: 97  YNNNYNNNYNNNYNNNYKKLYK 118



 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -2

Query: 601 NFNNNYLHRTTNN-ESLYKLL 542
           N+NNNY +   NN  + YK L
Sbjct: 96  NYNNNYNNNYNNNYNNNYKKL 116


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -2

Query: 610 WXTNFNNNYLHRTTNN-ESLYK 548
           +  N+NNNY +   NN + LYK
Sbjct: 97  YNNNYNNNYNNNYNNNYKKLYK 118



 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -2

Query: 601 NFNNNYLHRTTNN-ESLYKLL 542
           N+NNNY +   NN  + YK L
Sbjct: 96  NYNNNYNNNYNNNYNNNYKKL 116


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/34 (23%), Positives = 19/34 (55%)
 Frame = -2

Query: 268 TFHKDKKPNFLREILQKNTENIYQEVKYKHRKTK 167
           T  + + P      +++ TE +Y+E+  +H+K +
Sbjct: 125 TLQRAEYPTNRSLFIREQTEEMYREMLLEHKKRR 158


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 348 SNGSCIHKGVSNRNGLHTSAA 410
           S  S  H+ +   NGLHT+ A
Sbjct: 393 SPDSARHQRIGGCNGLHTTTA 413


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 426 YINIMLPLKYANH 388
           YI +  P+KYA H
Sbjct: 285 YIAVTQPIKYAKH 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,408
Number of Sequences: 438
Number of extensions: 3706
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)