Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_H20
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0482 + 18218163-18218362,18220388-18220446,18223027-182230...    29   4.6  
08_01_0288 - 2327613-2327618,2327664-2327709,2327960-2328094,233...    28   6.0  
06_01_0762 + 5699619-5699744,5699831-5699891,5699979-5700078,570...    28   8.0  

>10_08_0482 +
           18218163-18218362,18220388-18220446,18223027-18223083,
           18223245-18223279,18223617-18223720,18223870-18223945,
           18224045-18224103,18224183-18224248,18224338-18224421,
           18224503-18224567,18224658-18224740,18224832-18224903,
           18225166-18225306,18225395-18225456,18225539-18225605,
           18225863-18226075
          Length = 480

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 18  KSHF-IWSFCLAPVFFFLLCAVFIQHQKKCNLLSNYIVLNKPLNNS 152
           +SHF IW+   AP+   + C V    Q+  N+LSN  V   PL+N+
Sbjct: 286 RSHFSIWALAKAPLL--IGCDVRSMSQQTKNILSNSEVWAGPLSNN 329


>08_01_0288 -
           2327613-2327618,2327664-2327709,2327960-2328094,
           2330218-2330612,2330626-2330820
          Length = 258

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 376 CQAMRWCQFWVVNDSKADCRIAWMGTSSLNHY 281
           CQA+ WCQF+ ++      R    G S++  Y
Sbjct: 192 CQAVTWCQFFTISTRGGGKRPIGAGFSTIGTY 223


>06_01_0762 +
           5699619-5699744,5699831-5699891,5699979-5700078,
           5700436-5700560,5700631-5700706,5701122-5701164
          Length = 176

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 98  FLMLYENCAQQKEKDWSQTKXPNEM 24
           +LM YENC Q+++KD  + K   E+
Sbjct: 100 WLMNYENCVQRRDKDQGEHKRGAEV 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,348,813
Number of Sequences: 37544
Number of extensions: 216387
Number of successful extensions: 415
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)