Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_H20
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81071-7|CAE11303.1|  313|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z82078-7|CAB04947.3|  801|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF497514-1|AAM33381.1|  801|Caenorhabditis elegans heavy metal t...    28   7.2  
AF497513-1|AAM33380.1|  801|Caenorhabditis elegans heavy metal t...    28   7.2  
AF490977-1|AAQ06435.1|  801|Caenorhabditis elegans ABC6 protein ...    28   7.2  

>Z81071-7|CAE11303.1|  313|Caenorhabditis elegans Hypothetical
           protein F28F8.8 protein.
          Length = 313

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +3

Query: 24  HFIWSFCLAPVFFFLLCAVFIQ-HQKKCNL 110
           HFIW  CL PVF  L     IQ H K  ++
Sbjct: 209 HFIWKSCLCPVFMHLTHFSDIQIHMKNVSV 238


>Z82078-7|CAB04947.3|  801|Caenorhabditis elegans Hypothetical
           protein W09D6.6 protein.
          Length = 801

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +3

Query: 12  HPKSHFIWSFCLAPVFFFLL 71
           HP +H + +FC++ +FF++L
Sbjct: 97  HPYTHLLLAFCVSKLFFWIL 116


>AF497514-1|AAM33381.1|  801|Caenorhabditis elegans heavy metal
           tolerance factor 1 protein.
          Length = 801

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +3

Query: 12  HPKSHFIWSFCLAPVFFFLL 71
           HP +H + +FC++ +FF++L
Sbjct: 97  HPYTHLLLAFCVSKLFFWIL 116


>AF497513-1|AAM33380.1|  801|Caenorhabditis elegans heavy metal
           tolerance factor 1 protein.
          Length = 801

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +3

Query: 12  HPKSHFIWSFCLAPVFFFLL 71
           HP +H + +FC++ +FF++L
Sbjct: 97  HPYTHLLLAFCVSKLFFWIL 116


>AF490977-1|AAQ06435.1|  801|Caenorhabditis elegans ABC6 protein
           protein.
          Length = 801

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +3

Query: 12  HPKSHFIWSFCLAPVFFFLL 71
           HP +H + +FC++ +FF++L
Sbjct: 97  HPYTHLLLAFCVSKLFFWIL 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,338,966
Number of Sequences: 27780
Number of extensions: 212928
Number of successful extensions: 580
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)