Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_H18
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz...    27   1.1  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   2.5  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   2.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   4.4  
SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         24   7.6  
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    24   7.6  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    24   7.6  
SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        24   7.6  

>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -1

Query: 157 ENFRYIHFSLIYYLILWELALVLSF 83
           +NF Y+ F  ++ L++W++  + SF
Sbjct: 184 KNFAYLTFISLFVLVIWQILYLRSF 208


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 294  YALLCNFKECKFTNKNT*LSTFLRCELMNSLTFTLTKKFIL 172
            Y L+ +F     TNK + L + L C L N L   + + F+L
Sbjct: 1718 YYLISSFVAISMTNKTSGLPSSLICNLQNFLA-RIARDFLL 1757


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 154 NFRYIHFSLIYYLILWELALVLSFIITFTSVF 59
           N   I ++L+YYLI+    L+ S I  FT  F
Sbjct: 317 NASSIIYTLMYYLIIAPTLLITSAICMFTIFF 348


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 188  VNVKVKE-FINSQRRNVDSYVFLFVNLHS 271
            + V  KE F N+Q+R + SY+F FV L S
Sbjct: 1936 LKVDQKEIFSNNQKRAILSYLFRFVCLFS 1964


>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 72

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = -1

Query: 259 HKQKYVTVNISTLRVNELFDFYID*EVYFKLKLFENFRYIHFSLIYYLILWELALV 92
           H    V   I+ L +  +   + +   Y+KL     F +IH+ L++   L E+ L+
Sbjct: 14  HSCTVVEKCITNLLITTILLCFFNATTYWKLFFGAMFDFIHYQLLFRNSLSEILLL 69


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 22/77 (28%), Positives = 36/77 (46%)
 Frame = -1

Query: 337 SAGRLKNRKKIKSGLCTLM*L*RVQVHKQKYVTVNISTLRVNELFDFYID*EVYFKLKLF 158
           SA  LKN KK+   L T+       +   +  T  +S++  +E+F   +       L++F
Sbjct: 169 SAVVLKNSKKVVPRLNTV----NSSLDFLQNRTPRLSSILPDEIFTKRLP-----NLRIF 219

Query: 157 ENFRYIHFSLIYYLILW 107
            NF  +   LIY L +W
Sbjct: 220 SNFIKVCRPLIYMLFMW 236


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 191 NVKVKEFINSQRRNVDSYVFLFVNLHSLKLHKS 289
           N+ V++FI+  RR+ DS+ + FV  H + LH S
Sbjct: 613 NILVEQFIDLVRRHEDSF-YDFV--HRVYLHDS 642


>SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 122

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -1

Query: 208 LFDFYID*EVYFKLKLFENFRYIHFSLIYYLILWELALVLSFIITFTS 65
           +F F I   + F + LF    Y     +   I+  +ALV   +I + S
Sbjct: 50  IFSFVISRMIIFFISLFNKNTYCELPAVADAIINSIALVCIIVILYFS 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,229,145
Number of Sequences: 5004
Number of extensions: 20286
Number of successful extensions: 45
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)