Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_H17
(804 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc... 247 1e-66
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe... 29 0.58
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 27 4.1
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 26 5.5
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 26 7.2
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 7.2
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.5
SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase |S... 25 9.5
SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces pomb... 25 9.5
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 25 9.5
>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 192
Score = 247 bits (605), Expect = 1e-66
Identities = 117/192 (60%), Positives = 150/192 (78%), Gaps = 1/192 (0%)
Frame = -3
Query: 649 KVQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFTFVCPTELIAFSDKAKDFA 470
++ KPAPDF TAVVNG F ++KL+D+ GK+V L FYPLDFTFVCPTE++AFS+ A FA
Sbjct: 4 QIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAASKFA 63
Query: 469 GIDCQVIGVSTDSEFSHLAWINTPRKDGGLGKMEIPLLADYKKQISKDYDVLLDD-GFAL 293
+ QVI STDSE+SHLA+INTPRK+GGLG + IPLLAD ++S+DY VL++D G A
Sbjct: 64 ERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAGVAF 123
Query: 292 RGLFIIDRNGTLRHMSVNDLPVGRSVDETLRLVKAFQFADKHGEVCPAGWNPDTNADTIK 113
RGLF+ID G LR +++NDLPVGRSVDE LRL+ AFQF ++HGEVCPA W+ +DTI
Sbjct: 124 RGLFLIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEHGEVCPANWH--KGSDTI- 180
Query: 112 PNPKDSKEYFQK 77
+ K+ ++YF K
Sbjct: 181 -DTKNPEKYFSK 191
>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 195
Score = 29.5 bits (63), Expect = 0.58
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -3
Query: 586 LKLSDFTG-KYVVLFFYPLDFTFVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLAW 410
++L D T K +V+F YP T C + F D D +V+G+S D+ + A+
Sbjct: 65 IRLRDITANKGLVIFAYPKASTPGCTKQGCGFRDNYPKIQASDYEVLGLSFDTSKAQKAF 124
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/58 (31%), Positives = 23/58 (39%)
Frame = -3
Query: 679 FXTTSXTRAPKVQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFTFVCPTE 506
F +S T Q P P F + +G+F + K V L YP TF TE
Sbjct: 257 FTLSSSTLLKLHQSPEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1389
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -3
Query: 109 NPKDSKEYFQKAN*LEH*GRTY-RLPYSVRI 20
NP D+ Y+ KA+ LEH G T +P ++R+
Sbjct: 1073 NPTDTFAYYIKASLLEHLGETTDSVPSAIRL 1103
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 144 QPAGHTSPCLSANWKALTRRSVSSTERPTGRSFTDM*RRVPLRSIMNKPLNANP 305
Q +G P LS N TR + + D+ R+VP +S+ K +A+P
Sbjct: 634 QSSGRPGP-LSPNLNVTTRIDIKGKKGSMHLQPRDVNRKVPFKSMHTKSKSADP 686
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 145 WNPDTNADTIKPNPKDS 95
WNP+ D+IK NP+ S
Sbjct: 1219 WNPEYTNDSIKSNPEGS 1235
>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 25.4 bits (53), Expect = 9.5
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = -3
Query: 514 PTELIAFSDKAKDFAG-IDCQVIGVSTDSEFSHLAWINTPRKD--GGLGKMEIP 362
PT+L+AF + + + G + +V+ VS D E L +N P ++ G G M P
Sbjct: 182 PTKLVAFKQRKERYPGELQWEVL-VSQDEE--RLRKLNLPLREPHGSTGPMSTP 232
>SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 204
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 150 AGHTSPCLSANWKALTRRSVSSTERPTGRSFTDM*RRVPLRS 275
A T+ +SA+ +ALT R +++ E + R F VPLR+
Sbjct: 91 ANGTTTGISAHDRALTTRQLANPEVTSPREFNRPGHIVPLRA 132
>SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 263
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = -3
Query: 619 ATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFTFVCPTEL 503
A ++++ N++ +DF GK+ +++F +CP EL
Sbjct: 100 AFSLIDHHGNRVTDNDFKGKFSLIYFGFTRCPDICPDEL 138
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -2
Query: 764 HARKNVVHCEAXKSKCTVAGFQSSKKD 684
H K+ HC KC+V GF +D
Sbjct: 813 HLGKSCPHCGQPLPKCSVCGFSLGDED 839
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,085,987
Number of Sequences: 5004
Number of extensions: 62870
Number of successful extensions: 178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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