Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_H15
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.02c |sss1||translocon gamma subunit Sss1|Schizosaccharom...    36   0.002
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    25   3.0  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    24   7.0  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    24   9.3  
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    24   9.3  

>SPAC4G8.02c |sss1||translocon gamma subunit
           Sss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 70

 Score = 36.3 bits (80), Expect = 0.002
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 237 KQFAKDSIRLVRRCTKPDRKEFQKIAIATA 148
           K F K+    ++RC KPDRKEF  I+ A A
Sbjct: 13  KNFYKEGSHFIKRCVKPDRKEFLSISKAVA 42


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 279 NLIMDQIAKFVEPGKQFAKDSIRLVRRCTKPDRKEFQKIAIAT 151
           N  MDQ+AK  E  ++     IRL  +    +R+     A AT
Sbjct: 415 NSAMDQLAKVNERNRRRNHTEIRLAEQRMNEERRRLSAAATAT 457


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 73  DNYVINGDMNQLYKESNEAHDAKSDGCCNGNLLEFFPIRF 192
           D  V++   +   K+      AKS+G  NGN  +F    F
Sbjct: 499 DEQVLDAYKDVYEKQRKAEQKAKSNGVMNGNQRQFLGFTF 538


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 229 ELLARLDEFCDLIHY*INNSTIVLLLIHVDNYLIA 333
           ++L++L  F    HY   N  + ++L+H+ NY +A
Sbjct: 447 DILSKL--FSAAKHYNSLNGLLAMILVHMANYKLA 479


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 373 IDYCSCTFLSWGREQLNNCRRELTIKR 293
           +D   CTF+       + CRR L I+R
Sbjct: 195 LDLADCTFMVDNESCYDICRRNLDIER 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,306,385
Number of Sequences: 5004
Number of extensions: 22257
Number of successful extensions: 46
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)