Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_H10
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0644 + 26376544-26376929,26377013-26377193,26377314-26379017     28   5.3  
02_04_0605 - 24290777-24290830,24290914-24291075,24291494-242916...    28   5.3  
12_02_0332 + 17653413-17653581,17654045-17654139,17654292-176544...    28   7.0  

>03_05_0644 + 26376544-26376929,26377013-26377193,26377314-26379017
          Length = 756

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 450 YLLDFNLHFNVPLFGQETFYYWAYP 376
           Y+  F  HFN  +FG E  +YW  P
Sbjct: 431 YVDFFTKHFNWAVFGNELKWYWTEP 455


>02_04_0605 -
           24290777-24290830,24290914-24291075,24291494-24291694,
           24291777-24291961,24292117-24292246
          Length = 243

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -2

Query: 591 EILFAKLRPNKNDITAILKIIIGLRYCT 508
           EILF K+R ++N   +I+ +++G+  CT
Sbjct: 119 EILFDKVRYSRNTKLSIVLVLVGVAVCT 146


>12_02_0332 +
           17653413-17653581,17654045-17654139,17654292-17654444,
           17655013-17655117,17655197-17655268,17655514-17655626,
           17655727-17655861,17655970-17656038,17656154-17656241,
           17656348-17656419,17656505-17656605,17656724-17656841,
           17656933-17656992,17657593-17657703,17659044-17659154
          Length = 523

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -2

Query: 606 SILNSEILFAKLRPNKNDITAILKIIIG-LRYCT--YVTFEQVPPIHYNI 466
           +++    LF  L   K DI  ++ I+ G + YC   Y TF+Q   I+ N+
Sbjct: 353 AVIGLVTLFGSLEMPKADIWVVIAILSGVIGYCAKIYFTFQQNMTIYQNL 402


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,757,329
Number of Sequences: 37544
Number of extensions: 215670
Number of successful extensions: 326
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)