Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_H10
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026203-1|AAB71246.2|  506|Caenorhabditis elegans Hypothetical ...    30   1.6  
U80839-14|AAB37920.1|  151|Caenorhabditis elegans Hypothetical p...    28   4.8  
Z83238-11|CAE11318.1|  326|Caenorhabditis elegans Hypothetical p...    28   6.3  

>AF026203-1|AAB71246.2|  506|Caenorhabditis elegans Hypothetical
           protein E03E2.1 protein.
          Length = 506

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
 Frame = -3

Query: 344 IIHTNKFV*SFIKALTQSPYIPTLLVADLNNHTLCSRSKIKPVQSENSYC----DDYKLK 177
           +I  N FV  F+K+ TQ  ++  LL      H + +    K V + N  C    D Y L 
Sbjct: 212 LIFKNSFVGHFLKSATQQKFLDYLL------HLISNFQSRKNVDNNNGICCTENDHYSLL 265

Query: 176 DNAYFFFHISNFKVVE 129
              +FF H +  K++E
Sbjct: 266 --GFFFEHHNEKKLIE 279


>U80839-14|AAB37920.1|  151|Caenorhabditis elegans Hypothetical
           protein ZC204.14 protein.
          Length = 151

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -3

Query: 257 NNHTLCSRSKIKPVQSENSYCDDYKLKDNAYFFFHIS 147
           N +     S++KP++S+    +D + K++  F FH++
Sbjct: 48  NRYASNRSSQVKPIRSDPPDSEDLRSKEHQVFMFHLN 84


>Z83238-11|CAE11318.1|  326|Caenorhabditis elegans Hypothetical
           protein T08G3.12 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -2

Query: 531 IIGLRYCTYVTFEQVPPIHYNI--KYITCYLLDFNL 430
           I+G     + T + + P+ ++I   +ITC+ LDFNL
Sbjct: 31  ILGFYIIIFKTPKTLQPVKFSILVMHITCFWLDFNL 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,457,123
Number of Sequences: 27780
Number of extensions: 246421
Number of successful extensions: 492
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)