Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_H09
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|...   224   5e-60
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz...   224   5e-60
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi...   138   5e-34
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M...   138   5e-34
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch...   138   5e-34
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro...    84   9e-18
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    44   1e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    41   1e-04
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    41   1e-04
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy...    25   7.6  

>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
           Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score =  224 bits (548), Expect = 5e-60
 Identities = 105/123 (85%), Positives = 113/123 (91%)
 Frame = -1

Query: 397 KPLXGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 218
           K L GKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 6   KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65

Query: 217 TLHLVLRLRGGTIEPSLRILAMKYNC*KMICRKCYARLHPRATNWRKTKCGHTNKMRPKK 38
           TLHLVLRLRGG IEPSL+ LA KYNC K ICRKCYARL PRATN RK KCGHTN++RPKK
Sbjct: 66  TLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQLRPKK 125

Query: 37  KIQ 29
           K++
Sbjct: 126 KLK 128


>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
           Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score =  224 bits (548), Expect = 5e-60
 Identities = 105/123 (85%), Positives = 113/123 (91%)
 Frame = -1

Query: 397 KPLXGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 218
           K L GKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 6   KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65

Query: 217 TLHLVLRLRGGTIEPSLRILAMKYNC*KMICRKCYARLHPRATNWRKTKCGHTNKMRPKK 38
           TLHLVLRLRGG IEPSL+ LA KYNC K ICRKCYARL PRATN RK KCGHTN++RPKK
Sbjct: 66  TLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQLRPKK 125

Query: 37  KIQ 29
           K++
Sbjct: 126 KLK 128


>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
           Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score =  138 bits (333), Expect = 5e-34
 Identities = 66/71 (92%), Positives = 69/71 (97%)
 Frame = -1

Query: 397 KPLXGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 218
           K L GKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 6   KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65

Query: 217 TLHLVLRLRGG 185
           TLHLVLRLRGG
Sbjct: 66  TLHLVLRLRGG 76


>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 382

 Score =  138 bits (333), Expect = 5e-34
 Identities = 66/71 (92%), Positives = 69/71 (97%)
 Frame = -1

Query: 397 KPLXGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 218
           K L GKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 6   KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65

Query: 217 TLHLVLRLRGG 185
           TLHLVLRLRGG
Sbjct: 66  TLHLVLRLRGG 76



 Score =  138 bits (333), Expect = 5e-34
 Identities = 66/71 (92%), Positives = 69/71 (97%)
 Frame = -1

Query: 397 KPLXGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 218
           K L GKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 82  KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 141

Query: 217 TLHLVLRLRGG 185
           TLHLVLRLRGG
Sbjct: 142 TLHLVLRLRGG 152



 Score =  138 bits (333), Expect = 5e-34
 Identities = 66/71 (92%), Positives = 69/71 (97%)
 Frame = -1

Query: 397 KPLXGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 218
           K L GKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 158 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 217

Query: 217 TLHLVLRLRGG 185
           TLHLVLRLRGG
Sbjct: 218 TLHLVLRLRGG 228



 Score =  138 bits (333), Expect = 5e-34
 Identities = 66/71 (92%), Positives = 69/71 (97%)
 Frame = -1

Query: 397 KPLXGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 218
           K L GKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 234 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 293

Query: 217 TLHLVLRLRGG 185
           TLHLVLRLRGG
Sbjct: 294 TLHLVLRLRGG 304



 Score =  138 bits (333), Expect = 5e-34
 Identities = 66/71 (92%), Positives = 69/71 (97%)
 Frame = -1

Query: 397 KPLXGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 218
           K L GKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 310 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 369

Query: 217 TLHLVLRLRGG 185
           TLHLVLRLRGG
Sbjct: 370 TLHLVLRLRGG 380


>SPAC589.10c |||ribomal-ubiquitin fusion protein
           Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score =  138 bits (333), Expect = 5e-34
 Identities = 66/71 (92%), Positives = 69/71 (97%)
 Frame = -1

Query: 397 KPLXGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 218
           K L GKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 6   KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65

Query: 217 TLHLVLRLRGG 185
           TLHLVLRLRGG
Sbjct: 66  TLHLVLRLRGG 76


>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
           protein modifier Ned8|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 78

 Score = 84.2 bits (199), Expect = 9e-18
 Identities = 35/72 (48%), Positives = 52/72 (72%)
 Frame = -1

Query: 397 KPLXGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 218
           K L GK I L+++ +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S
Sbjct: 6   KTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGS 65

Query: 217 TLHLVLRLRGGT 182
            LHLVL LRGG+
Sbjct: 66  VLHLVLALRGGS 77


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 44.0 bits (99), Expect = 1e-05
 Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
 Frame = -1

Query: 382 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHL 206
           K +  +V A   I  +K KIQ ++    ++Q+LI++G+ L D +T+ +YNI+++   + +
Sbjct: 12  KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQDFIVCM 71

Query: 205 VLRLRGGTIEP 173
           V R +  T  P
Sbjct: 72  VSRPKTSTSTP 82


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 22/75 (29%), Positives = 38/75 (50%)
 Frame = -1

Query: 418 TQCKYSSKPLXGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 239
           T    + K    +   + V++  ++  +K  I     I  ++QRLI+AG+ L+D  +L  
Sbjct: 2   TNISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKT 61

Query: 238 YNIQKESTLHLVLRL 194
           Y IQ   ++HLV  L
Sbjct: 62  YKIQDGHSIHLVKTL 76


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 19/58 (32%), Positives = 33/58 (56%)
 Frame = -1

Query: 385 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 212
           GK   LE+E ++T   +K ++     +PP++Q++I  G QL+D   L    I+  +TL
Sbjct: 10  GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67


>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
 Frame = -1

Query: 391 LXGKTITLEVEASDTIENVKAKIQDKEGIP---PDQQRLIFAGKQLEDGRTLSDYNIQKE 221
           L G   T EV    T+   +    + +G P   P  +  I A     +G TL+ YN    
Sbjct: 94  LKGPERTSEVSLPQTVNLSEISNNNDKGQPTNTPPVRSTIVAPSLYSEGSTLNHYNNGSH 153

Query: 220 STLH 209
             LH
Sbjct: 154 QVLH 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,922,528
Number of Sequences: 5004
Number of extensions: 38230
Number of successful extensions: 116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)