Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_H08
(391 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc... 36 0.002
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc... 35 0.004
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 28 0.44
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 0.77
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 27 1.0
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 27 1.0
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy... 25 3.1
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc... 25 4.1
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 25 5.5
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 24 7.2
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 7.2
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 24 9.5
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 24 9.5
>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
S25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 88
Score = 35.9 bits (79), Expect = 0.002
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = -1
Query: 109 LARRALIELREKGLIKQVVQHHGQVIYTRA 20
LAR A+ +L E+G+I++V QH Q IYTRA
Sbjct: 55 LARIAIRDLAERGVIQKVDQHSKQAIYTRA 84
Score = 35.1 bits (77), Expect = 0.004
Identities = 13/33 (39%), Positives = 24/33 (72%)
Frame = -3
Query: 212 LFDKPTYEKLYKEVPQYKLITPAVVSERLKVRG 114
+FDK +++ KEVP +K I+ +V+ +R+K+ G
Sbjct: 21 VFDKSIIDRINKEVPAFKFISVSVLVDRMKING 53
>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
S25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 35.1 bits (77), Expect = 0.004
Identities = 13/33 (39%), Positives = 24/33 (72%)
Frame = -3
Query: 212 LFDKPTYEKLYKEVPQYKLITPAVVSERLKVRG 114
+FDK +++ KEVP +K I+ +V+ +R+K+ G
Sbjct: 21 VFDKSIIDRINKEVPAFKFISVSVLVDRMKING 53
Score = 34.3 bits (75), Expect = 0.007
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = -1
Query: 109 LARRALIELREKGLIKQVVQHHGQVIYTR 23
LAR A+ +L E+G+I++V QH Q IYTR
Sbjct: 55 LARIAIRDLAERGVIQKVDQHSKQAIYTR 83
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 28.3 bits (60), Expect = 0.44
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 124 FNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDHFFFL-ALP 276
FNL+ GV ++ G S +F+ + + + W F + P+D FL ALP
Sbjct: 151 FNLTFLFTGVFAVIAGASP-NFASICVFDALWSFGVGGNLPVDSAIFLEALP 201
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 27.5 bits (58), Expect = 0.77
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 184 SFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 282
SF Y L NN++L +S + ++ F++ PPP
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 27.1 bits (57), Expect = 1.0
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 310 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRC 212
K HR DP+ P RR GP + V + +C
Sbjct: 203 KVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 27.1 bits (57), Expect = 1.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 203 YQTTPGCSTCHELFLWTTSSSWLCRHRILPSSSV 304
YQ TP HE WT SS L H + PS+ +
Sbjct: 156 YQLTPEFMAAHEEKTWTASS--LNSHNLTPSNVI 187
>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 613
Score = 25.4 bits (53), Expect = 3.1
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +1
Query: 127 NLSDTTAGVISLYCGTSLYSFSYVGLSNNT---WLFNLSRTFPLDHF 258
+LSD VIS G + Y F V LS+ T W N + +P+ F
Sbjct: 222 SLSDYWGRVISRTLGDTTYGFPNVSLSSITSQEWYRNANFPYPIITF 268
>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 150
Score = 25.0 bits (52), Expect = 4.1
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 151 VISLYCGTSLYSFSYV-GLSNNTWLFNLSRTFPLDHFFFLALPPP 282
V+ + C +L F ++ G+ N T P +F+ L PPP
Sbjct: 37 VVVIICIAALIFFFFIIGIINRRRTKKGQATIPFTNFYPLTAPPP 81
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 24.6 bits (51), Expect = 5.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 53 DYLFDETFFPKLDECSSR 106
D LF E+F +LD C R
Sbjct: 684 DELFSESFLSRLDNCEKR 701
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 24.2 bits (50), Expect = 7.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 205 SNNTWLFNLSRTFPLDHFFFLAL 273
S N+W+F L TF F+L+L
Sbjct: 316 SRNSWIFTLLLTFTQLTIFYLSL 338
>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 24.2 bits (50), Expect = 7.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 263 SWLCRHRILPSSSVFFEAVW 322
+WL + ++PSSS F + W
Sbjct: 131 AWLEKQELVPSSSNFLNSFW 150
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 23.8 bits (49), Expect = 9.5
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -3
Query: 197 TYEKLYKEVPQYKLITPAVVS 135
TY+K+Y E P K++ + S
Sbjct: 96 TYKKIYNEYPPTKILVQEIAS 116
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 23.8 bits (49), Expect = 9.5
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = -2
Query: 381 RPADAFQFKDAAQEGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS 235
R D ++K A +E + + K EE + W++++EE+ + K +
Sbjct: 125 REEDKAEWKKAREEDKAEW-----KKAREEDKAEWKKAREEDKAEWKKA 168
Score = 23.8 bits (49), Expect = 9.5
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = -2
Query: 381 RPADAFQFKDAAQEGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS 235
R D ++K A +E + + K EE + W++++EE+ + K +
Sbjct: 136 REEDKAEWKKAREEDKAEW-----KKAREEDKAEWKKAREEDKAEWKKA 179
Score = 23.8 bits (49), Expect = 9.5
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = -2
Query: 381 RPADAFQFKDAAQEGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRKS 238
R D ++K A +E + + K EE + W++++EE+ R S
Sbjct: 147 REEDKAEWKKAREEDKAEW-----KKAREEDKAEWKKAREEDKEWRNS 189
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,647,296
Number of Sequences: 5004
Number of extensions: 33292
Number of successful extensions: 132
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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