Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_H03
(405 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 31 0.051
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc... 29 0.27
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce... 28 0.63
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 28 0.63
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 0.84
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 27 0.84
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 0.84
SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces pombe... 27 1.5
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 26 1.9
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 25 4.5
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 25 4.5
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 4.5
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 4.5
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 24 7.8
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 31.5 bits (68), Expect = 0.051
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = -1
Query: 231 KEAKLREIEAKEKVIRDA---KLKEEKERASALEIKALEEMASGTAKK*KD 88
KE KL++ A+E+ IR +LK EKER + K L E AKK K+
Sbjct: 76 KEKKLQKQRAQEERIRQKEAERLKREKERQQREQEKKLREQEKIAAKKMKE 126
>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 442
Score = 29.1 bits (62), Expect = 0.27
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 249 QNRLSKKEAKL-REIEAKEKVIRDAKLKEEKERASALEIKALEEMASGTAKK*KDK 85
Q + +K K RE A+E K KEE+ER +A E A A+ K +DK
Sbjct: 291 QEKAAKAARKWEREAGAREAAAAAQKKKEEEERRAAEEAAAKASAAAANKKAKEDK 346
>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 292
Score = 27.9 bits (59), Expect = 0.63
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -1
Query: 264 YGAFHQNRLSKKEAKLREIE--AKEKVIRDAKLKEEKERASALEIKALE 124
+G ++NR +K +AK+R+IE A +DAK +E + E +A E
Sbjct: 30 FGLKNKNRSTKVQAKIRQIEQNAAASGSKDAKRQEALRKRREEEKRAAE 78
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 27.9 bits (59), Expect = 0.63
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -1
Query: 267 LYGAFHQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEEMASGTAK 100
L A+++ KK+ KE V+ + K+ A LE + E+M S AK
Sbjct: 305 LESAYNEELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLETVSEEQMGSSNAK 360
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.5 bits (58), Expect = 0.84
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -1
Query: 249 QNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEEM 118
Q KK K ++ +EK+ R+ +L+EE+E+ E K E++
Sbjct: 668 QKEREKKLKKQQQEADREKMAREQRLREEEEKRILEERKRREKL 711
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 27.5 bits (58), Expect = 0.84
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -1
Query: 255 FHQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEI-KALEE 121
+H R S+K+A L + + + + ++ K+R +LE+ KAL++
Sbjct: 446 YHMKRRSRKDAPLLKSQLLMDSLENLPVRASKDRVRSLEVAKALQD 491
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 27.5 bits (58), Expect = 0.84
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = -1
Query: 249 QNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEEMASGTAK 100
Q+ L +++ LRE E+ ++ A+ ++ + ALE++A + A+ A+
Sbjct: 106 QDLLEQRQVALREAREAEEELQRARQYNDRSTSEALELEARAKKAAQDAE 155
>SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 1.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -1
Query: 252 HQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEE 121
H N+ KKEAK + + + L +K++ E+K+L+E
Sbjct: 299 HLNKFEKKEAKKDRKKKSKDGDQTTLLLRKKQKLGNAEVKSLDE 342
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 1.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -1
Query: 249 QNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALE 139
++ +KKE K R+ EAK++ + KE+KE+ E
Sbjct: 438 EDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKKSE 474
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 4.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 250 PEQAIKERSETTRD*SQREGHPRCQAEGGERKS 152
PE A + S+++ R+G +E GER+S
Sbjct: 127 PESASRSSSQSSHQRHSRDGRGELGSEHGERRS 159
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 25.0 bits (52), Expect = 4.5
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -1
Query: 381 CFTVQQFYNKMSDLPYGAPVRISP 310
CF + Y K D+P G +R P
Sbjct: 183 CFDRSKAYGKRLDIPSGTAIRFEP 206
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.0 bits (52), Expect = 4.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 47 FPHFNQNRKLRCYQL 3
FPH Q+R+LR Y+L
Sbjct: 951 FPHIPQHRRLRLYRL 965
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 25.0 bits (52), Expect = 4.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 168 EEKERASALEIKALEEMASGTAK 100
EEK++AS L + L + SGT K
Sbjct: 191 EEKQQASGLNFRGLAKPISGTLK 213
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 24.2 bits (50), Expect = 7.8
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 255 FHQNRLSKKEAKLREIEAKEKVIRD-AKLKEEKERASALEIK 133
F + K+ E++ + +R+ AK K+EKER ALE K
Sbjct: 30 FEETEEEIKKRSPEELKQAIEALREKAKEKKEKERILALEEK 71
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,472,915
Number of Sequences: 5004
Number of extensions: 24380
Number of successful extensions: 105
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -