Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_H02
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23529-12|AAL13323.1|  561|Caenorhabditis elegans Cation diffusi...    28   6.1  
U23529-11|AAK39165.1|  519|Caenorhabditis elegans Cation diffusi...    28   6.1  
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.      27   8.1  

>U23529-12|AAL13323.1|  561|Caenorhabditis elegans Cation diffusion
           facilitator familyprotein 1, isoform b protein.
          Length = 561

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 162 YGGASADIHAGLMRHGCWGYCSDHGGSIGVSYDGSSDCVGDD 287
           +GG+    H         G+   H    G S+DG SDC G++
Sbjct: 250 HGGSHGHSHNNKKTKKNDGHGHSHANGHGHSHDGKSDCNGEE 291


>U23529-11|AAK39165.1|  519|Caenorhabditis elegans Cation diffusion
           facilitator familyprotein 1, isoform a protein.
          Length = 519

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 162 YGGASADIHAGLMRHGCWGYCSDHGGSIGVSYDGSSDCVGDD 287
           +GG+    H         G+   H    G S+DG SDC G++
Sbjct: 208 HGGSHGHSHNNKKTKKNDGHGHSHANGHGHSHDGKSDCNGEE 249


>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical
           protein K04G2.8b protein.
          Length = 1188

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +3

Query: 252 SYDGSSDCVGDDCWARDHI---HAGLVRNRSWSDDGSTVSQVTQGT 380
           SYDG   CV        +I   +AGL+RN SW+ D S +S+  Q T
Sbjct: 226 SYDGFIRCVVRIVIESPNITQVYAGLIRNLSWNAD-SGMSEALQPT 270


>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical
           protein K04G2.8a protein.
          Length = 1186

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +3

Query: 252 SYDGSSDCVGDDCWARDHI---HAGLVRNRSWSDDGSTVSQVTQGT 380
           SYDG   CV        +I   +AGL+RN SW+ D S +S+  Q T
Sbjct: 226 SYDGFIRCVVRIVIESPNITQVYAGLIRNLSWNAD-SGMSEALQPT 270


>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
          Length = 1186

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +3

Query: 252 SYDGSSDCVGDDCWARDHI---HAGLVRNRSWSDDGSTVSQVTQGT 380
           SYDG   CV        +I   +AGL+RN SW+ D S +S+  Q T
Sbjct: 226 SYDGFIRCVVRIVIESPNITQVYAGLIRNLSWNAD-SGMSEALQPT 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,115,167
Number of Sequences: 27780
Number of extensions: 213205
Number of successful extensions: 705
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)