Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_G24
(394 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein S28|Schizosa... 74 7e-15
SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein S28|Sc... 74 7e-15
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom... 26 2.4
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom... 25 4.2
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon... 25 4.2
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 25 5.5
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 5.5
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 24 7.3
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 24 7.3
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 24 9.7
>SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein
S28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 68
Score = 74.1 bits (174), Expect = 7e-15
Identities = 35/49 (71%), Positives = 42/49 (85%)
Frame = -2
Query: 291 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 145
P LA+V+KVLGRTGS+G TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 7 PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55
>SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein
S28|Schizosaccharomyces pombe|chr 3|||Manual
Length = 68
Score = 74.1 bits (174), Expect = 7e-15
Identities = 35/49 (71%), Positives = 42/49 (85%)
Frame = -2
Query: 291 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 145
P LA+V+KVLGRTGS+G TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 7 PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55
>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 25.8 bits (54), Expect = 2.4
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +1
Query: 169 SFHVPDDLTAGLPNELDLHLSTLALRTSTAEYFHDTSKNVGFI 297
S H+P ++ + N L + +++++R T Y+H K + I
Sbjct: 57 SIHMPAPFSSVVRNALKANPNSVSIRDITTHYYHFAEKMLHLI 99
>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 326
Score = 25.0 bits (52), Expect = 4.2
Identities = 10/45 (22%), Positives = 24/45 (53%)
Frame = -2
Query: 327 VLSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSR 193
+ I A +D+P + ++V+ + T + CT+VK+ + ++
Sbjct: 114 IQEGIGSALLDEPEKVHKLVRAVKSTLGESFCTEVKIRIAKDLNK 158
>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 25.0 bits (52), Expect = 4.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 264 LSRHEQERWVYPFWLVISSLIQLTHVHQSWRVSKKK 371
+S+ RWVYPF + S+L+ T +Q ++ K++
Sbjct: 283 ISKDVLSRWVYPF-VPDSNLLNQTFSYQRHQIYKEE 317
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 24.6 bits (51), Expect = 5.5
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 192 DGWSPQ*TRPSLEYTGPENQYGRVLSRHEQ 281
D S + P L T PE + GRVLS EQ
Sbjct: 503 DADSSEPASPVLMPTKPEKKKGRVLSETEQ 532
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -2
Query: 381 PADAFFSKHASFGARVLIVLSSILQA 304
PA ++FS +SFGA++ S++L+A
Sbjct: 338 PAPSYFSPGSSFGAQLCANGSTLLRA 363
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 24.2 bits (50), Expect = 7.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 218 SSSLGRPAVRSSGT*KDRSVTETSSLFLNLNVKL 117
++S+ PAV SS T S+T T S + + +V +
Sbjct: 203 TTSVNSPAVSSSETLTSVSITSTESAYTSSSVDI 236
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 24.2 bits (50), Expect = 7.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 236 WP*EPVRPSTFTTRARTLGLSILACNIE 319
WP +P + +G+SI+AC IE
Sbjct: 498 WPGDPTFRKSNDVCIALIGVSIIACGIE 525
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 23.8 bits (49), Expect = 9.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 384 RPADAFFSKHASFGARVLIVLSSILQAKMDKPNVLARVVKV 262
+P+ F ++S RVL VL+ L+ KP+ +++V V
Sbjct: 108 KPSTETFELNSSDAGRVLEVLNKELKIVTSKPSAPSKLVIV 148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,600,980
Number of Sequences: 5004
Number of extensions: 29327
Number of successful extensions: 80
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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