Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_G23
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    33   0.037
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    27   3.2  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   5.6  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    26   5.6  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   5.6  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    26   7.5  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    26   7.5  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   7.5  
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy...    25   9.9  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   9.9  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    25   9.9  

>SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 33.5 bits (73), Expect = 0.037
 Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
 Frame = -3

Query: 547 TPIGTEKIYYGTLTPQIKAIKIFSLCTSIAGIAIQP-MLIREAS--SIGSTSLLVAICSV 377
           T      +Y   L   I  IK FS+ +      I P ML+ +A   S+G+   +V +   
Sbjct: 18  TSFSLAAVYDAPLKKAIGNIKKFSIGSLGLTYMISPVMLLLDAGGLSLGTRMSMVFLACT 77

Query: 376 VGFFTFVTPILLHFITKKYVTEIYYNAETSTYKAITINFFATKRIHEFKVEDVFVPD 206
               T ++  ++H+  K YV+E        +    T N    KR+ ++ ++ + +PD
Sbjct: 78  T---TSLSTAIIHWAAKSYVSEATLKGNVLSLN--TFNILGKKRLSQYTLDKLKIPD 129


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -3

Query: 631 LTEPSKSLKCTSTFNSITRKYAIKLKEETPIGTEK 527
           L E S S   T+T NS  R+YAIK+ ++  I  EK
Sbjct: 105 LGEGSYSTVLTATENSTKREYAIKVLDKRHIIKEK 139


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 33 TFITIYFWFLLSCVSPSLKSI 95
          + + IY W+L+ C S S+ S+
Sbjct: 12 SLVLIYLWYLVDCTSFSMNSV 32


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = -3

Query: 658 NESKLAVLALTEPSKSLKCTSTFNSITRKYAIKLKEETPIGTEKIYYGTLTPQIKAIKI 482
           NE   +VLA T  +  LKC         + A++ K++ P GT+       +P+ K +K+
Sbjct: 430 NEQLNSVLAATNLATELKCEDINKLKQLRLALETKKDLP-GTKVQLKPAYSPEGKLLKL 487


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 297 PKLRHTKRLQLISLQQNEFMNS 232
           PK+ H K L+LIS   N F +S
Sbjct: 670 PKMSHLKHLELISSAANSFSDS 691


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 8/107 (7%)
 Frame = -3

Query: 652 SKLAVLALTEPSKSLKCTSTFNSITRKYAIKLKEETPIGTEKIYYGTLTPQIKAIKIFSL 473
           S + +  L  P       ++ +  T  + + +KE    G   ++   +   I  + + + 
Sbjct: 322 SLILIGLLVSPDDPRLMGNSSDGSTSPFVLAIKEANIRGLPSVFNAVII--ISTVSVANS 379

Query: 472 CTSIAGIAIQ--------PMLIREASSIGSTSLLVAICSVVGFFTFV 356
           CT  A   +         P        +G   L +A+C + GFF ++
Sbjct: 380 CTFTASRTLHAMAAKGDAPRFFAYTDRLGRPLLAMAVCLLFGFFAYI 426


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 131 WVIEESCFNEQRLAISMHSSEH 196
           W++  SCFN  R+A S++  E+
Sbjct: 513 WMLGNSCFNRARIAHSIYHWEY 534


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 21  LSLQTFITIYFWFLLSCVSP 80
           L  + FI  Y+++LL C+SP
Sbjct: 60  LKYELFIIYYYYYLLICLSP 79


>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 425 SIKHRKYFFIGSHMFSGGILHVC 357
           S K R +F +G H+ S G L+VC
Sbjct: 47  SSKQRSWF-VGDHVVSDGYLYVC 68


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = -3

Query: 235 FKVEDVFVPDVPGMFTTMHANGKPLFIEARFFNNPLHYAKIMGYDKPMDFKLGE 74
           +K +D   PDV     T+H         A +  N  H    +G D  + + +GE
Sbjct: 610 YKKKDALRPDVSEKVFTVHVRANKRLTPAEYNRNIFHIEFDLG-DSGLTYDIGE 662


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/59 (22%), Positives = 26/59 (44%)
 Frame = -3

Query: 625 EPSKSLKCTSTFNSITRKYAIKLKEETPIGTEKIYYGTLTPQIKAIKIFSLCTSIAGIA 449
           EP  + + + + ++ T   ++     T   +  +Y G L P +    +F L  SI  +A
Sbjct: 49  EPEAAAEPSESTSTPTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVA 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,321,411
Number of Sequences: 5004
Number of extensions: 70504
Number of successful extensions: 194
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)