Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_G21
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.03c |||ACN9 family mitochondrial protein|Schizosacchar...    50   3e-07
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    31   0.24 
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    30   0.31 
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    28   1.7  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   2.2  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    27   3.9  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   6.7  

>SPBP23A10.03c |||ACN9 family mitochondrial
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 115

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
 Frame = -3

Query: 758 IFRVHR-GLPPELRVLGDNYARDEFKRHKKCNKDEAKI-FLNEWTDYAINLAKQMKPLHQ 585
           + R HR  L  E R LGD Y + EF+RH+        + FL+ W  YA  L  +     Q
Sbjct: 24  VLRAHRYHLGAEERALGDEYVKAEFRRHRNVTNPLHLVGFLSSWERYADALENES--WKQ 81

Query: 584 AKNKMVGEYLDPSLLDHMSDEQIVQLYELHKA 489
            K      Y +  LL+ ++D+QI QLYEL KA
Sbjct: 82  EK------YSNTDLLESLNDQQIGQLYELSKA 107


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 721 VSWETTTPGTSSSDTKNVIRTRLRFFSTNGRTTPLT 614
           VSW +TTP T +S +K    T +   STN  +T  T
Sbjct: 617 VSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFT 652


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -2

Query: 405 LLRFPYNSRSNALQQPSAGDASKVSPLSFHRFFCY 301
           LL+ P ++R   L++ +   A+ VSP+ FH  +C+
Sbjct: 62  LLQIPLSNRHTDLEENTEFKANLVSPVDFHAGYCF 96


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -2

Query: 372 ALQQPSAGDASKVSPLSFHRFFCYYGGFNFKKHFFLIISF*AVF 241
           AL +   GDA K+   ++  F C Y  F      FL++ +  +F
Sbjct: 251 ALMKDDVGDAEKLPTENWFDFICNYVSFMVGSIIFLVVYWIGIF 294


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 563  EYLDPSLLDHMSDEQIVQLYELHK 492
            +YLDPSLLD    E + ++ EL K
Sbjct: 1307 KYLDPSLLDFFCSEFVPKITELSK 1330


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 426 CAVALKALLRFPYNSRSNALQQPSAGDASKVSPLSF 319
           C    K  L+ P NS S+A Q PS+  ++ V   +F
Sbjct: 502 CRPHKKVTLKMPLNSGSSAPQSPSSNTSASVLTRNF 537


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 712 ETTTPGTSSSDTKNVIRTRLRF 647
           E T PG+S SDT +V + R+ F
Sbjct: 868 EPTPPGSSDSDTASVSKKRVDF 889


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,989,207
Number of Sequences: 5004
Number of extensions: 58343
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)