Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_G19
(666 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 316 1e-86
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 316 1e-86
SB_56| Best HMM Match : Actin (HMM E-Value=0) 316 1e-86
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 316 1e-86
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 314 3e-86
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 313 7e-86
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 259 1e-69
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 106 1e-23
SB_54| Best HMM Match : Actin (HMM E-Value=0) 98 6e-21
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 85 4e-17
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 69 3e-12
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 38 0.006
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 38 0.007
SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.48
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 30 1.9
SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0) 29 2.6
SB_48528| Best HMM Match : Extensin_2 (HMM E-Value=1) 29 3.4
SB_25899| Best HMM Match : Ribonuc_2-5A (HMM E-Value=0) 29 4.5
SB_22949| Best HMM Match : rve (HMM E-Value=1.2e-19) 29 4.5
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_8145| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=0) 28 5.9
SB_53874| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24) 28 7.9
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 316 bits (775), Expect = 1e-86
Identities = 148/156 (94%), Positives = 152/156 (97%)
Frame = -3
Query: 664 AXDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTY 485
A DFEQEM TAASSSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GIHETTY
Sbjct: 183 ALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTY 242
Query: 484 NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV 305
NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSV
Sbjct: 243 NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSV 302
Query: 304 WIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 197
WIGGSILASLSTFQQMWISKQEYDESGP+IVHRKCF
Sbjct: 303 WIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 338
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 316 bits (775), Expect = 1e-86
Identities = 148/156 (94%), Positives = 152/156 (97%)
Frame = -3
Query: 664 AXDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTY 485
A DFEQEM TAASSSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GIHETTY
Sbjct: 221 ALDFEQEMETAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTY 280
Query: 484 NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV 305
NSIMKCDVDIRKDLYANTVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSV
Sbjct: 281 NSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSV 340
Query: 304 WIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 197
WIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 341 WIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 316 bits (775), Expect = 1e-86
Identities = 148/156 (94%), Positives = 152/156 (97%)
Frame = -3
Query: 664 AXDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTY 485
A DFEQEM TAASSSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GIHETTY
Sbjct: 220 ALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTY 279
Query: 484 NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV 305
NSIMKCDVDIRKDLYANTVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSV
Sbjct: 280 NSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSV 339
Query: 304 WIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 197
WIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 340 WIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 316 bits (775), Expect = 1e-86
Identities = 148/156 (94%), Positives = 152/156 (97%)
Frame = -3
Query: 664 AXDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTY 485
A DFEQEM TAASSSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GIHETTY
Sbjct: 221 ALDFEQEMTTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTY 280
Query: 484 NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV 305
NSIMKCDVDIRKDLYANTVLSGG+TMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSV
Sbjct: 281 NSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSV 340
Query: 304 WIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 197
WIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 341 WIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 314 bits (772), Expect = 3e-86
Identities = 147/156 (94%), Positives = 153/156 (98%)
Frame = -3
Query: 664 AXDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTY 485
A DFEQEMATAA+SSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GIHETTY
Sbjct: 220 ALDFEQEMATAAASSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTY 279
Query: 484 NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV 305
NSIMKCDVDIRKDLYANTVLSGG+TM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSV
Sbjct: 280 NSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSV 339
Query: 304 WIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 197
WIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 340 WIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 313 bits (769), Expect = 7e-86
Identities = 146/156 (93%), Positives = 152/156 (97%)
Frame = -3
Query: 664 AXDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTY 485
A DFEQEM TAASSSS+EKSYELPDGQVITIGNERFRCPEAL QPSFLGME+ GIHETTY
Sbjct: 194 ALDFEQEMQTAASSSSIEKSYELPDGQVITIGNERFRCPEALLQPSFLGMESSGIHETTY 253
Query: 484 NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV 305
NSIMKCDVDIRKDLYANTV+SGGTTMYPG+ADRMQKEI+ALAPSTMKIKIIAPPERKYSV
Sbjct: 254 NSIMKCDVDIRKDLYANTVMSGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSV 313
Query: 304 WIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 197
WIGGSILASLSTFQQMWISKQEYDESGP+IVHRKCF
Sbjct: 314 WIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 349
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 259 bits (635), Expect = 1e-69
Identities = 118/145 (81%), Positives = 132/145 (91%)
Frame = -3
Query: 631 ASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIR 452
A+S LEK+YELPDGQVI+IGNERFRCPEA+FQP+FLGMEA GIHE YN IMKCDVDIR
Sbjct: 5 ANSPILEKTYELPDGQVISIGNERFRCPEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDIR 64
Query: 451 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS 272
KDLY+N VLSGG+TM+PGIADRMQKEI LA ++MK+K+IAPPERKYSVWIGGSILASLS
Sbjct: 65 KDLYSNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLS 124
Query: 271 TFQQMWISKQEYDESGPSIVHRKCF 197
TFQQMWI+K+EY E GP IVHRKCF
Sbjct: 125 TFQQMWIAKEEYHEYGPPIVHRKCF 149
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 106 bits (255), Expect = 1e-23
Identities = 63/174 (36%), Positives = 94/174 (54%), Gaps = 29/174 (16%)
Frame = -3
Query: 658 DFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNS 479
+ EQE A ++ L + Y LPDG+V+ + ERF PEALFQP + +E G+ E +N+
Sbjct: 226 NIEQEQKLALETTVLVEQYTLPDGRVVKLSGERFEAPEALFQPHLINVEGVGVAELLFNT 285
Query: 478 IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL--------------------- 362
I D+D R + Y + VLSGG+TMYPG+ R+++EI L
Sbjct: 286 IQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLEREIKQLYLERVLKGDTSKLSSGMGMEQ 345
Query: 361 APST-----MKIKI-IAPP-ERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 224
P T K KI I P RK+ V++GG++LA + W++++EY+E G
Sbjct: 346 IPLTADYLLQKFKIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 97.9 bits (233), Expect = 6e-21
Identities = 45/82 (54%), Positives = 57/82 (69%)
Frame = -3
Query: 664 AXDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTY 485
A D+E+E+ A +S E Y LPDGQ I IG+ERFR E LFQPS LG + GIHE+ +
Sbjct: 2265 AMDYERELKEAETSDDCEAPYMLPDGQSIRIGSERFRAAEPLFQPSLLGRDIDGIHESIF 2324
Query: 484 NSIMKCDVDIRKDLYANTVLSG 419
SI KCD+D+R +L+ N VLSG
Sbjct: 2325 KSIKKCDIDLRAELFHNIVLSG 2346
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 85.4 bits (202), Expect = 4e-17
Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 17/149 (11%)
Frame = -3
Query: 580 ITIGNERFRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 404
+ + ERF PE F P F + + E N I C +D+R+ LY N VLSGG+TM+
Sbjct: 196 VDVAYERFLGPEIFFHPEFSNPDFTTPLSEVVDNVIQNCPIDVRRPLYKNIVLSGGSTMF 255
Query: 403 PGIADRMQKEIT----------------ALAPSTMKIKIIAPPERKYSVWIGGSILASLS 272
R+Q++I + P ++ ++I+ ++Y+VW GGS+LAS
Sbjct: 256 RDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQRYAVWFGGSMLASTP 315
Query: 271 TFQQMWISKQEYDESGPSIVHRKCF*THR 185
F + +K +YDE GPSI F HR
Sbjct: 316 EFYSVCHTKADYDEHGPSICRHNPF-LHR 343
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 68.9 bits (161), Expect = 3e-12
Identities = 30/85 (35%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
Frame = -3
Query: 520 GMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI 341
G A G+ + S+ D+DIR L+ + +++GG T+ G +R+ +E+ + P +M++
Sbjct: 146 GSTAMGVTQVVTTSVGMTDIDIRAGLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRL 205
Query: 340 KII---APPERKYSVWIGGSILASL 275
K+I + E++++ WIGGSILASL
Sbjct: 206 KLISNNSSVEKRFNPWIGGSILASL 230
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 52.4 bits (120), Expect = 3e-07
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Frame = -3
Query: 484 NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPS--------TMKIKIIA 329
+S++ C +D RK L N VL GGT M PG R+ +EI L S +K+
Sbjct: 64 DSLLLCPIDTRKTLAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQ 123
Query: 328 PP-ERKYSVWIGGSILASLSTFQQMWISKQEYDE 230
PP + W+GG+I SL +++ Y +
Sbjct: 124 PPVNANITAWLGGAIFGSLEVLADRSTTRERYQQ 157
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/28 (53%), Positives = 23/28 (82%)
Frame = -3
Query: 481 SIMKCDVDIRKDLYANTVLSGGTTMYPG 398
+I K D+D+R+ LY+N VLSGG+T++ G
Sbjct: 264 AIQKSDLDLRRVLYSNIVLSGGSTLFKG 291
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = -3
Query: 658 DFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFL 521
D +E+ ++ L K Y LPDGQ+I+IG E E LF+P L
Sbjct: 853 DHLKEVHNYKTNEGLTKFYTLPDGQMISIGYECISSMEPLFRPDLL 898
>SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 906
Score = 33.9 bits (74), Expect = 0.12
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Frame = -1
Query: 666 SLLTSSRKWPPL--HPAAPSRSLTNFP---TVRSSLSETKDSVAQRLSSNPRSWVWKLAA 502
S +T S K+PP+ +PA PS L P TV SLS T S+P S V L+
Sbjct: 454 SSITGSSKYPPVSPNPAKPSNILFEGPSSSTVFKSLSPTDQMSNSPSQSSPGSSVSDLSC 513
Query: 501 STRPHI 484
S+ P++
Sbjct: 514 SSDPNV 519
>SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 31.9 bits (69), Expect = 0.48
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -3
Query: 550 PEALFQPSFLGMEACGIHET 491
PE +FQPS LG+E GI ET
Sbjct: 3 PEIIFQPSMLGLEQAGITET 22
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +3
Query: 288 IDPPIHTEYFLSGGAMILIFIVDGARAVISFCIRSAIPGYMV-VPPD-NTVLAYKSLRMS 461
+DPP+ +Y L+GG ++ + FCI G++V PP+ N+ + R++
Sbjct: 758 LDPPLENKYNLNGGQQVIQSTLQIQSLFFPFCI---FQGFVVPTPPECNSAIVLPDARIT 814
Query: 462 TS 467
S
Sbjct: 815 AS 816
>SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)
Length = 1066
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -1
Query: 270 PSNRCGSRNRSTTSLAPPLYTGSASK--RTARRCLQQPAAGC 151
P N+ G++ R +L P++TGS + RT + P+A C
Sbjct: 879 PGNQAGNKTRPLRALRSPIHTGSTLEVDRTRQGTRPDPSARC 920
>SB_48528| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 329
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 620 LPREVLRTSRRSGHHYRKRKIPLPRGSLP 534
LPR ++R HY++ +PLPRG P
Sbjct: 132 LPRGGSPLTKRRESHYQEEGVPLPRGGSP 160
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 620 LPREVLRTSRRSGHHYRKRKIPLPRGSLP 534
LPR ++R HY++ +PLPRG P
Sbjct: 154 LPRGGSPLTKRRESHYQEEGVPLPRGGGP 182
>SB_25899| Best HMM Match : Ribonuc_2-5A (HMM E-Value=0)
Length = 603
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -2
Query: 614 REVLRTSRRSGHHYRKRKIPLPR--GSLPTLVLGYGSLRHPR 495
R++LR R HHYR+ + R G++P + Y + R PR
Sbjct: 521 RDLLRALRNKKHHYRELPDEVKRSLGTIPDEYVRYFTSRFPR 562
>SB_22949| Best HMM Match : rve (HMM E-Value=1.2e-19)
Length = 158
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 582 SSLSETKDSVAQRLSSNPRSWVWK 511
S+ SETK SV +R + + W+W+
Sbjct: 96 STKSETKASVVERFNRTSKEWMWR 119
>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 436 NTVLSGGTTMYPGIADRMQKEITALAP 356
N ++GG TMY R+++E+ A+ P
Sbjct: 132 NVFVTGGNTMYNNFMARLERELLAIRP 158
>SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = -1
Query: 303 GSVDRSSPPSLPSNRCGSRNRS----TTSLAPPLYTGSASKRTARRC 175
GS+ SP S P +R GSR R+ T+S A + +T ++C
Sbjct: 338 GSIAPPSPTSTPRSRTGSRTRTPPTPTSSRASSRGSARGGAKTTKKC 384
>SB_8145| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=0)
Length = 893
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 584 LTVGKFVRLLEGAAGCSGGHF 646
+TVGK + L+ G AG GHF
Sbjct: 366 MTVGKLIELIAGKAGVLEGHF 386
>SB_53874| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 174
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -1
Query: 630 HPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPRSWVWKLAASTRPHI 484
HP SR +N P V S + V R+ SN V+ S +PH+
Sbjct: 113 HPHVYSRVKSNHPHVYSRVKSNHPHVYSRVKSN-HPHVYSRVKSNQPHV 160
>SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24)
Length = 676
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -1
Query: 630 HPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPRSWVWKLAASTRPHI 484
HP SR +N P V S + V R+ SN V+ S +PH+
Sbjct: 615 HPHVYSRVKSNHPHVYSRVKSNHPHVYSRVKSN-HPHVYSRVKSNQPHV 662
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,656,919
Number of Sequences: 59808
Number of extensions: 501559
Number of successful extensions: 1581
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1564
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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