Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_G17
         (356 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    27   0.65 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   0.86 
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    27   1.1  
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    25   4.6  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    24   6.1  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    24   8.0  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   8.0  

>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 27.5 bits (58), Expect = 0.65
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 222 NDKTQLNYSNILLLFECLQCMHDFVTEVSPLILLHRCRTMSSR 350
           N+ T  N+  I    E L+C+ D +  ++ ++ L  CR    R
Sbjct: 365 NEDTSTNFVTIKQEKELLKCLCDTLNAIAHILFLKHCRKSDRR 407


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.1 bits (57), Expect = 0.86
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 235  NLTIQIYYYFLNVYNACMTLLQKFRHLFYYI 327
            NL   +  YF+NV+N+ +  L K   LF+ +
Sbjct: 3857 NLAESVLDYFINVHNSNLDSLSKISTLFFMV 3887


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +3

Query: 177 TVLILIFTL*DFYCDNDKTQLNYSNILLLFE 269
           TVL+++  L D     DK  L+YS+IL LFE
Sbjct: 88  TVLVMLMIL-DMMLYIDKATLSYSSILGLFE 117


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 165 HTSETAFYNTMSHRN*AMELHLE 97
           H +ET  Y   SH+   + LHLE
Sbjct: 72  HAAETTLYFPASHQQIQLTLHLE 94


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -2

Query: 349 RDDIVLHLCNKISGETSVTKSCMHCR 272
           +DD V+ +C + +   ++T+   HCR
Sbjct: 273 QDDSVVQICPECNNSFTLTRRRRHCR 298


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 186 LRQYLSYHTSETAFYNTMSHRN 121
           LR+Y+ Y  +E  F +T+ H N
Sbjct: 281 LRRYVRYFIAEYTFASTLRHPN 302


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 162 CGMTNTVLILIFTL*DFYCDNDKTQLNYSNIL 257
           CG+ N   +    + D Y D   T +NY+++L
Sbjct: 23  CGLANEASLSANEVQDIYHDFVATSINYADLL 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,380,073
Number of Sequences: 5004
Number of extensions: 25203
Number of successful extensions: 66
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)