Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_G17
         (356 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   2.5  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    21   5.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   5.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   7.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   7.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   7.6  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 244 IQIYYYFLNVYNACMTLLQKFRHLFYYI 327
           +Q+Y +FL      + +L    H+F Y+
Sbjct: 481 LQLYIFFLVTTAGTIGILMDAPHIFEYV 508


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 94  HLQM*LHCSISMTHCIIKG 150
           ++Q  LHC +   HC + G
Sbjct: 32  YVQKQLHCILDRGHCDVIG 50


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 101 KCNSIAQFL*LIVL*KAVSEVWYDKYCLNPNLYIM 205
           K  SIA F+ LI+L   +  +       NP L+++
Sbjct: 2   KYESIALFISLIILNDEIYNIIASPQLNNPTLFMI 36


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +3

Query: 87  CKPPPNVTP 113
           C PPP  TP
Sbjct: 392 CSPPPRQTP 400


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 328 LCNKISGETSVTKSCMHCRHSKSSSIFE 245
           L N ISGETSV  S +     K+S + +
Sbjct: 139 LDNGISGETSVCPSQIVVFDLKNSKLLK 166


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 75  KGHCCKPPPNVTPLLNF 125
           +GH  +  P+V PLL F
Sbjct: 59  EGHDDREQPSVYPLLRF 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,994
Number of Sequences: 438
Number of extensions: 1910
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)