Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_G13
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    28   1.3  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    26   4.0  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    25   7.0  
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha...    25   7.0  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   9.2  

>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 265 HVVVALEREVVPGDGKGDSRQVRYEAAVHDVLP 363
           H VVAL   + P DGK +     Y++  HDV+P
Sbjct: 25  HEVVALAN-LHPEDGKDEIDSFMYQSVGHDVIP 56


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
 Frame = -2

Query: 230 CPASWRWTCRSPWARCG-SWGTC 165
           C   + W C  PW   G +W TC
Sbjct: 312 CKYEFCWVCLGPWTEHGNNWYTC 334


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -1

Query: 573 PAHYRGDLVRVPLLRDTYWEFHMD--SVNVNASRFCAQGCSAIADTGTSLI 427
           P    G    + L+ D YW  H+D  SV +  +   A+ C AI  T  +++
Sbjct: 264 PVFALGRAQELLLILDEYWNNHLDLRSVPIYYASSLARKCMAIFQTYVNMM 314


>SPBC30B4.08 |eri1||double-strand siRNA
           ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -2

Query: 227 PASWRWTCRSPW 192
           P +W W C  PW
Sbjct: 194 PKNWAWACDGPW 205


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 131 PASNSV*YLPMNTSPRIHSGPMGFGTSS 214
           P SN + + P N    I SGPMG  T S
Sbjct: 254 PLSNPL-FQPSNVPQSIPSGPMGMKTGS 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,226,481
Number of Sequences: 5004
Number of extensions: 41528
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)