Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_G11
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    43   5e-05
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    26   4.3  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    25   9.9  

>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 47/215 (21%), Positives = 81/215 (37%), Gaps = 14/215 (6%)
 Frame = -3

Query: 667 YAMDVYELNRRVNSXESIVGWWATGNEVTNHSSVIHEYYSRECREP------------VH 524
           Y   +Y L+ + N  E +VGW+AT  ++   S++I   Y+    EP            VH
Sbjct: 85  YHRAMYHLHLKANPREVVVGWYATSPDLDAFSALIQNLYASPA-EPGTAPLGTYPHPCVH 143

Query: 523 VTLDTSLAGGRMGLRAYVCVPLGVPNG-KQGCMFTPVDVTLTCYEPEIVGLQVCQKTXXX 347
           +T++T ++   + ++ YV  P+G+       C F P   T+   E    GL+        
Sbjct: 144 LTVNTDVS-SPLAIKTYVSSPVGITERLADSCAFVPTPFTIRDDEAVRSGLKA---VAAP 199

Query: 346 XXXXXXXXXXXSDLAQVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLQLAHS-A 170
                      +DL Q+                                   L    S  
Sbjct: 200 KNDPSRLASLFTDLQQLRRSTLELLSMIERVSDYVQNVIDGSSPANVAVGRYLMKCFSLI 259

Query: 169 PDLAKDTFSDAFASSVKDLLMVVTLAQLIKTQLQL 65
           P +    F   F+S ++D+L+VV LA  ++TQ+ +
Sbjct: 260 PCVEGQDFEKIFSSHLQDVLVVVYLANTLRTQVDI 294


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -2

Query: 431 HVHSCRCHSHV 399
           H+H CRCH+++
Sbjct: 69  HIHCCRCHTYI 79


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 187 QLAHSAPDLAKDTFSDAFASSVKDLL 110
           QL  +  DL KD FSD      KDLL
Sbjct: 30  QLKRNLADLEKDNFSDIRFEIPKDLL 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,161,208
Number of Sequences: 5004
Number of extensions: 38448
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)