Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_G11
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    54   9e-08
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu...    28   6.9  

>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 46/209 (22%), Positives = 86/209 (41%), Gaps = 14/209 (6%)
 Frame = -3

Query: 640 RRVNSXESIVGWWATGNEVTNHSSVIHEYYSRECRE--------PVHV-TLDTSLAGG-- 494
           ++ +  E  VGW+ T +++T+   + H+YY R   E        P+ V T+DT+ +G   
Sbjct: 82  KKTSPNEQPVGWFLTTSDITSSCLIYHDYYVRVITEASARRESPPIVVLTIDTTFSGDMS 141

Query: 493 -RMGLRAYVCVPLGVPN--GKQGCMFTPVDVTLTCYEPEIVGLQVCQKTXXXXXXXXXXX 323
            RM +RAY+    G+P   G    +F P+ V L  +  E+V +Q+ +K            
Sbjct: 142 KRMPVRAYLRSKAGIPGAAGPHCAIFNPLRVELAAFPGELVAMQLIEKALDSRRREATLE 201

Query: 322 XXXSDLAQVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLQLAHSAPDLAKDTFS 143
                L                                     +  +  S+ ++  +   
Sbjct: 202 SGLEQLETSTAQMIEWLERMLHYVEDVNKNGEKPGDAQIGRQLMDIVTASSNNMQPEKLD 261

Query: 142 DAFASSVKDLLMVVTLAQLIKTQLQLNEK 56
               ++++D +MV  LA+L +TQLQ++E+
Sbjct: 262 TLVKNTLRDYVMVSYLAKLTQTQLQVHER 290


>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
            (myotubularin) family protein 5 protein.
          Length = 1744

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 473  CLCTIRSAKWKARLHVHSCRCHSH 402
            C CT    +W   +H   CR H H
Sbjct: 1556 CYCTNILTRWSKAVHCKKCRIHVH 1579


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,315,304
Number of Sequences: 27780
Number of extensions: 232792
Number of successful extensions: 708
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)