Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_G09
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.09 |||ER to Golgi transport protein Yos1|Schizosaccharo...    57   2e-09
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   6.3  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    25   8.4  

>SPAC19A8.09 |||ER to Golgi transport protein
           Yos1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 81

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
 Frame = -2

Query: 311 MLTLWNLFEATLLCLNAVCVLHEERFMQKIGWGANTQTQGFED-QSSMKFQXLNLVRSIR 135
           M    N+   TLL LNAV +L E+RF+ +IGW + +   GF D Q ++K + L+L+R+IR
Sbjct: 1   MFGFGNILYVTLLLLNAVAILSEDRFLGRIGW-SQSAALGFGDRQDTIKSRILHLIRAIR 59

Query: 134 TVTKIPXXRRXSLTRMXKL*LG 69
           TV   P     ++  +  L LG
Sbjct: 60  TVMTFPLIAINTIVIVYNLVLG 81


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 258 MCITRRKIHAENWLGSKYPNPGL*RSIFD 172
           + I R KI  E+W  +KY + G    +FD
Sbjct: 309 LAIDRLKIFVEDWKNNKYSDNGPRIPVFD 337


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 232 CRKLAGEQIPKPRALKINLR*NSKXLTW*GQL 137
           CR + GE+IP P  L+  L    K   W G++
Sbjct: 486 CRHMHGEKIPHPNGLEYTLEGPRK--NWTGKI 515


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,640,551
Number of Sequences: 5004
Number of extensions: 28176
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)