Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_G09
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.44 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   0.58 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 271  VSTQYVYYTKKDSCRKLAGEQIP 203
            V TQY  YTK D+  +   +++P
Sbjct: 1209 VITQYTVYTKADNAEEPTSQKVP 1231


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 330 IIIGKKYAHFMEFI*SNIVMSQRSMCITRRKIHAENWLG 214
           +I+G     ++ F   NIV S    CI+ R      WLG
Sbjct: 276 VIMGVFLICWVPFFCVNIVTSYCKTCISGRAFQVLTWLG 314



 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 149 VRSIRTVTKIP 117
           V+SIR VTK+P
Sbjct: 223 VKSIRAVTKLP 233


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 274 NNVASNKFHKVSIFLSDYDLS 336
           + +  + FH   + +SDYD+S
Sbjct: 489 SELLGHAFHSQVLSMSDYDIS 509


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,603
Number of Sequences: 438
Number of extensions: 1997
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)