Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_G08
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    26   7.1  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.4  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    25   9.4  

>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 387 YSTCFKICIYNIKNQVDILTKLLMTSAPSLIYPLN 491
           YST F   ++      D+ T  L TS P+LI  LN
Sbjct: 298 YSTVFADALHTSYRGHDVYTCTLPTSGPALIEGLN 332


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 538 HLAMILATCLIIGIFNMTNKKNLA 609
           H    LATC++IG+F++   +N A
Sbjct: 754 HHFFSLATCVLIGVFDLPELQNEA 777


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 196 VICYNT*YIISKYISYNGLN 137
           +IC NT   ISKY +Y G++
Sbjct: 69  IICLNTHRTISKYEAYGGIH 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,168
Number of Sequences: 5004
Number of extensions: 49097
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)