Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_G08
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40411-4|AAC47065.1|  440|Caenorhabditis elegans Temporarily ass...    39   0.004
AF040661-5|AAG24212.1|  209|Caenorhabditis elegans Hypothetical ...    29   5.0  
Z98866-5|CAB11548.1|  436|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>U40411-4|AAC47065.1|  440|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 320 protein.
          Length = 440

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = -2

Query: 789 SFGRGXTAPVKGAEMPKAVTTEPWDGKDG 703
           S+G+G T+ ++G   PK   TE WDGKDG
Sbjct: 392 SYGKGRTSSLRGDGFPKIQKTEKWDGKDG 420


>AF040661-5|AAG24212.1|  209|Caenorhabditis elegans Hypothetical
           protein W10G11.3 protein.
          Length = 209

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 71  KIIEYCSNFDQCEDTLSVIKYKIQSIV 151
           K+IE C NF++C  TL     K+ +IV
Sbjct: 76  KVIEICINFNRCRQTLDCQPDKVFAIV 102


>Z98866-5|CAB11548.1|  436|Caenorhabditis elegans Hypothetical
           protein Y49E10.4 protein.
          Length = 436

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = -2

Query: 789 SFGRGXTAPVKGAEMP----KAVTTEPWDGKD 706
           ++G+G    +K   +     K V T+PWDGKD
Sbjct: 383 NYGKGRVLEIKPTHLSNNFLKIVETQPWDGKD 414


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,047,257
Number of Sequences: 27780
Number of extensions: 269904
Number of successful extensions: 475
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)