Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_G06
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen...    33   0.28 
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen...    33   0.28 
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ...    33   0.28 
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ...    33   0.28 
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll...    33   0.28 
J05066-1|AAA27989.1|  261|Caenorhabditis elegans alpha-2 (IV) co...    33   0.28 
U28740-2|AAM51506.2|  417|Caenorhabditis elegans Hypothetical pr...    31   0.64 
U28740-1|AAA68317.3|  434|Caenorhabditis elegans Hypothetical pr...    31   0.64 
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    31   1.1  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    31   1.1  
J05067-1|AAB59179.1|  313|Caenorhabditis elegans clb-2 protein.        31   1.1  
AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
            protein.
          Length = 1759

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -3

Query: 729  KSGQLLERVSRCAVCIKNTT*SH 661
            KSG L  RVSRC VC+K+T   H
Sbjct: 1737 KSGNLRTRVSRCQVCVKSTDGRH 1759


>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
            protein.
          Length = 1758

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -3

Query: 729  KSGQLLERVSRCAVCIKNTT*SH 661
            KSG L  RVSRC VC+K+T   H
Sbjct: 1736 KSGNLRTRVSRCQVCVKSTDGRH 1758


>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
            isoform a protein.
          Length = 1758

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -3

Query: 729  KSGQLLERVSRCAVCIKNTT*SH 661
            KSG L  RVSRC VC+K+T   H
Sbjct: 1736 KSGNLRTRVSRCQVCVKSTDGRH 1758


>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
            isoform b protein.
          Length = 1759

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -3

Query: 729  KSGQLLERVSRCAVCIKNTT*SH 661
            KSG L  RVSRC VC+K+T   H
Sbjct: 1737 KSGNLRTRVSRCQVCVKSTDGRH 1759


>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
            protein.
          Length = 1795

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -3

Query: 729  KSGQLLERVSRCAVCIKNTT*SH 661
            KSG L  RVSRC VC+K+T   H
Sbjct: 1773 KSGNLRTRVSRCQVCVKSTDGRH 1795


>J05066-1|AAA27989.1|  261|Caenorhabditis elegans alpha-2 (IV)
           collagen protein.
          Length = 261

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -3

Query: 729 KSGQLLERVSRCAVCIKNTT*SH 661
           KSG L  RVSRC VC+K+T   H
Sbjct: 239 KSGNLRTRVSRCQVCVKSTDGRH 261


>U28740-2|AAM51506.2|  417|Caenorhabditis elegans Hypothetical
           protein B0563.6b protein.
          Length = 417

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +2

Query: 473 LTNHNSETILFSTKSKFVIKN*LPYFNCFP*QYLNKDGIFSLIRKKQQYPIQK 631
           +TNH S+  +F   S       L  F CF   Y N+D + S +R+ Q   IQK
Sbjct: 291 ITNHASQFYVFCACSTDYRTTFLQKFPCFKTDYANRDRLRSFVRRTQSV-IQK 342


>U28740-1|AAA68317.3|  434|Caenorhabditis elegans Hypothetical
           protein B0563.6a protein.
          Length = 434

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +2

Query: 473 LTNHNSETILFSTKSKFVIKN*LPYFNCFP*QYLNKDGIFSLIRKKQQYPIQK 631
           +TNH S+  +F   S       L  F CF   Y N+D + S +R+ Q   IQK
Sbjct: 300 ITNHASQFYVFCACSTDYRTTFLQKFPCFKTDYANRDRLRSFVRRTQSV-IQK 351


>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
            K04H4.1b protein.
          Length = 1502

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -3

Query: 729  KSGQLLERVSRCAVCIKN 676
            K+G L +RVSRC VC+KN
Sbjct: 1484 KAGGLKDRVSRCQVCLKN 1501


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
            K04H4.1a protein.
          Length = 1759

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -3

Query: 729  KSGQLLERVSRCAVCIKN 676
            K+G L +RVSRC VC+KN
Sbjct: 1741 KAGGLKDRVSRCQVCLKN 1758


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
            protein.
          Length = 1758

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -3

Query: 729  KSGQLLERVSRCAVCIKN 676
            K+G L +RVSRC VC+KN
Sbjct: 1740 KAGGLKDRVSRCQVCLKN 1757


>J05067-1|AAB59179.1|  313|Caenorhabditis elegans clb-2 protein.
          Length = 313

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -3

Query: 729 KSGQLLERVSRCAVCIKN 676
           K+G L +RVSRC VC+KN
Sbjct: 295 KAGGLKDRVSRCQVCLKN 312


>AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical
           protein Y53C10A.4 protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 586 YFFSYQEETAISYTEKYSSRKL*KIMRLCRILNANRTSRDSF 711
           YFF Y E   IS  +   S KL + +RL ++  A+  + DSF
Sbjct: 44  YFFLYHETLIISKQKGACSYKLKEKLRLEKVWIASSNTADSF 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,705,306
Number of Sequences: 27780
Number of extensions: 298721
Number of successful extensions: 597
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)