Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_G04
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434 33 0.19
05_01_0499 - 4166891-4166942,4167191-4167510 31 1.0
06_01_0931 + 7192519-7194075 31 1.3
04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016 31 1.3
05_07_0359 - 29539294-29540832,29542366-29542518 29 4.1
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111... 29 4.1
02_02_0272 - 8452994-8453187,8453850-8454975 29 5.4
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 28 7.2
10_08_1048 - 22553676-22554866 28 7.2
07_03_0723 + 20954827-20954905,20954974-20956277 28 7.2
03_03_0204 + 15436660-15437244,15437355-15437632,15438792-154390... 28 7.2
04_04_1465 + 33794225-33794389,33794471-33794597,33794669-337947... 28 9.5
02_05_0272 - 27348537-27348728,27349035-27349192,27349292-273493... 28 9.5
>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
Length = 418
Score = 33.5 bits (73), Expect = 0.19
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +1
Query: 481 GMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMAL 597
G P R+SP L+ PAEAALS RSL S P ++
Sbjct: 138 GEEPPRRVSPAAVVLAVLLPAEAALSFIRSLSSLAPFSI 176
>05_01_0499 - 4166891-4166942,4167191-4167510
Length = 123
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = +1
Query: 391 LIANALALRSWLLLWNKLTLPATPSCSPKPGMRVPVRLSPCPFTLSRASPAEAA 552
LI LALR LL N + PS SP+ + R P P + + ASP+ +A
Sbjct: 5 LIIVPLALRGASLLGNAVAAAVVPSSSPEQQQQQQRRPRPPPGSKNGASPSSSA 58
>06_01_0931 + 7192519-7194075
Length = 518
Score = 30.7 bits (66), Expect = 1.3
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +1
Query: 244 LPPAE*SFRLMTSECAALNDAPTFCLNM*STPPPSVLKLGALGMALGEFLIANALALRSW 423
+PP + R CAAL +P S+ PPS A ++ +ALR+
Sbjct: 50 VPPGQTFERACIQACAALAFSPPAVAADLSSLPPS---------ASSPLVLVPNVALRTA 100
Query: 424 LLLW-NKLTLPATPSCSPKPGMRVPVRLSPCP 516
+L W ++L+LP SP V RL P P
Sbjct: 101 ILNWCDRLSLPYPAPLSPDTARDVVRRLMPSP 132
>04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016
Length = 360
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -3
Query: 581 ADFNDRHKLSAASAGLALDNVNGHGLSLTGTRIPGFGEQLGVAGKVNL 438
A N+R + S AS +A + + HG+ + G P +G AG ++L
Sbjct: 173 AGHNERRRRSNASEAMARGSAHPHGMPVLGHGFPPYGLPTSSAGALSL 220
>05_07_0359 - 29539294-29540832,29542366-29542518
Length = 563
Score = 29.1 bits (62), Expect = 4.1
Identities = 24/85 (28%), Positives = 33/85 (38%)
Frame = +1
Query: 460 PSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRGTFRA 639
P KPG P R +P P S +S A AA +L +K + P+R +
Sbjct: 155 PVLEAKPGRGRP-RKNPLPVASSTSSAAAAATALSLRVKRGPGRPRKNAAATPLRLGVKR 213
Query: 640 APEVPSEFTVXLPACLRARVGTCLP 714
P P + P L A+ G P
Sbjct: 214 GPGRPRKNAAATPLRLGAKRGPGRP 238
>03_01_0141 +
1116833-1117082,1117658-1118574,1119417-1119579,
1119668-1120497,1120562-1120570
Length = 722
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 453 CDAELLPEAGNAGPGQTQPV 512
C A LLPE GN G GQ+ V
Sbjct: 486 CSATLLPEEGNTGDGQSPKV 505
>02_02_0272 - 8452994-8453187,8453850-8454975
Length = 439
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +1
Query: 496 VRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRG 627
+RL P P +L RA+ A + WR L +ADP L F + RG
Sbjct: 20 LRLPPRPSSLPRAA---AVCARWRRLVTADPAFLRRFRAHHRRG 60
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 493 PVRLSPCPFTLSRASPAEAA 552
P+RLSP P ++SR P+ AA
Sbjct: 153 PIRLSPSPRSMSRTRPSSAA 172
>10_08_1048 - 22553676-22554866
Length = 396
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +1
Query: 331 STPPPSVLKLGALGMALGEFLIANALALRSWLLLWNKLTLPATPSCSPKPGMRVPVRLSP 510
ST PP +L A E L+ A+R+ + N L P P P + + RL+P
Sbjct: 47 STAPPLLLPAAHQAQAQDEQLLRQLTAIRATVSQLNHLRSSTPPPPPPPPELLLYSRLAP 106
>07_03_0723 + 20954827-20954905,20954974-20956277
Length = 460
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 466 CSPKPGMRVPVR-LSPCPFTLSRASPAEAALSLWR 567
CSP P R+P+R + C +ASP + + WR
Sbjct: 62 CSPAPSARIPLRGFTDCRL---KASPGSGSFTRWR 93
>03_03_0204 +
15436660-15437244,15437355-15437632,15438792-15439068,
15439160-15439405,15440853-15441134
Length = 555
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +1
Query: 439 KLTLPATPSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKS 579
K + P+ + P P ++P P + +PA A+ WR+ K+
Sbjct: 59 KTSSPSVAAPEKAPVAAAPAPVAPAPAATKQVAPARWAVDSWRTKKA 105
>04_04_1465 +
33794225-33794389,33794471-33794597,33794669-33794799,
33795153-33795254,33795337-33795420,33795504-33795731,
33795934-33796038,33796376-33796731,33797146-33797303,
33797399-33797505,33797852-33798061
Length = 590
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 585 PDGAEHVLVVAGERDLQGGPGGSVRV 662
PDGA+ V+ V L G P GS RV
Sbjct: 101 PDGADAVVQVEDTEQLAGAPDGSKRV 126
>02_05_0272 -
27348537-27348728,27349035-27349192,27349292-27349323,
27349420-27349514,27349614-27349687,27349800-27349878,
27350015-27350078,27350156-27350218,27350300-27350442,
27350566-27350703,27350792-27350913,27350993-27351158,
27351276-27351398,27351609-27351680,27351773-27351880,
27352481-27352597,27352727-27352865,27352974-27353080,
27353167-27353276,27353892-27354025,27354106-27354255,
27354329-27354549,27354647-27355318
Length = 1092
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/36 (50%), Positives = 19/36 (52%)
Frame = -2
Query: 375 HPQRAQLQHAGRRSGLHVQTEGGRIVERGAL*RHQP 268
+PQ AQ AGR G H Q GGR RG HQP
Sbjct: 48 NPQYAQ--QAGRGGGQH-QGRGGRYQGRGGPTSHQP 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,371,252
Number of Sequences: 37544
Number of extensions: 406250
Number of successful extensions: 1359
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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