Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_G02
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    33   0.024
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   3.6  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.8  
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy...    25   6.3  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   6.3  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    25   6.3  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   8.4  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   8.4  
SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces...    25   8.4  

>SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 33.5 bits (73), Expect = 0.024
 Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
 Frame = -3

Query: 555 TPIGTEKIYYGTLTPQIKAIKIFSLCTSIAGIAIQP-MLIREAS--SIGSTSLLVAICSV 385
           T      +Y   L   I  IK FS+ +      I P ML+ +A   S+G+   +V +   
Sbjct: 18  TSFSLAAVYDAPLKKAIGNIKKFSIGSLGLTYMISPVMLLLDAGGLSLGTRMSMVFLACT 77

Query: 384 VGFFTFVTPILLHFITKKYVTEIYYNAETSTYKAITINFFATKRIHEFKVEDVFVPD 214
               T ++  ++H+  K YV+E        +    T N    KR+ ++ ++ + +PD
Sbjct: 78  T---TSLSTAIIHWAAKSYVSEATLKGNVLSLN--TFNILGKKRLSQYTLDKLKIPD 129


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 305 PKLRHTKRLQLISLQQNEFMNS 240
           PK+ H K L+LIS   N F +S
Sbjct: 670 PKMSHLKHLELISSAANSFSDS 691


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 139 WVIEESCFNEQRLAISMHSSEH 204
           W++  SCFN  R+A S++  E+
Sbjct: 513 WMLGNSCFNRARIAHSIYHWEY 534


>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 433 SIKHRKYFFIGSHMFSGGILHVC 365
           S K R +F +G H+ S G L+VC
Sbjct: 47  SSKQRSWF-VGDHVVSDGYLYVC 68


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = -3

Query: 243 FKVEDVFVPDVPGMFTTMHANGKPLFIEARFFNNPLHYAKIMGYDKPMDFKLGE 82
           +K +D   PDV     T+H         A +  N  H    +G D  + + +GE
Sbjct: 610 YKKKDALRPDVSEKVFTVHVRANKRLTPAEYNRNIFHIEFDLG-DSGLTYDIGE 662


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 41  TFLTIYFWFLLSCVSPSLKSI 103
           + + IY W+L+ C S S+ S+
Sbjct: 12  SLVLIYLWYLVDCTSFSMNSV 32


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 31  RFTNIFNNLLLVFTFLRFS*FKIHWLIIA 117
           RF NIF +L       + + F ++WLI+A
Sbjct: 818 RFLNIFTDLSSTDFLHKVNVFAVYWLILA 846


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 447 MLIREASSIGSTSLLVAICSVVGF 376
           ML+   + IG TS L AIC  + F
Sbjct: 428 MLVTGVTGIGKTSCLYAICRELNF 451


>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 265

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 253 SFCCKEINCNRFVCRSFGVVVNFGNILFGDEMQQYWSYKREESH 384
           S C KE   NR +   F + ++F + L  ++  Q W  +  ESH
Sbjct: 181 SDCMKEFT-NRNLREDFLLHISFASSLTNEDEYQNWVSQDRESH 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,446
Number of Sequences: 5004
Number of extensions: 55547
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)