Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_F24
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   0.91 
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    24   4.8  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    24   6.4  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    23   8.5  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    23   8.5  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    23   8.5  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    23   8.5  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 0.91
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
 Frame = -2

Query: 195 PNSLSHPAGVERGL----PSPALCPAGTMKPWRLFINLFRMKLKNSCYAR 58
           P+S   P G  RG     P P LC  G   P    +  F +  K S +AR
Sbjct: 275 PHSCGDPCGKTRGQDCEHPCPLLCHPGPCPPCTATVEKFCLCGKESIHAR 324


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 305 RPMISSCFEVTQRTTSAKNV 246
           RP +SSCF VT +  S + +
Sbjct: 212 RPQLSSCFLVTMKDDSIEGI 231


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 710

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 74 TPAMPEALSRHHRNGNTDKMPFN 6
          TP+   A++  H++G  D MP N
Sbjct: 12 TPSAITAMAFSHKSGQNDSMPNN 34


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 44  VGLRLLA*QEFFSFILNKFINR--RQGFIVPA 133
           VG+ +L  + +F F  N+F+N+  R+  + PA
Sbjct: 681 VGICVLCYKIYFKFFRNRFMNQGEREPLLAPA 712


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 311 FGRPMISSCFEVTQRTTSAKNVQIHDSIPCFG 216
           +GR MI    +V ++    +N   HD++  +G
Sbjct: 709 YGRQMIEKTKDVVEKRYRIENGYSHDAVVIYG 740


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 157 AAIAGTVSCRNDEALASIYKLIQNEAEK 74
           A + G + C+N E ++ +Y+L   E  K
Sbjct: 334 AFLYGPLDCKNPEDISLLYQLATGEDSK 361


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1096

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -1

Query: 286  VSKSLKELPQPKMYKFTILFL-VLAC 212
            +S+ L+    P +Y+F ILF+ V++C
Sbjct: 1063 ISRCLQITRLPTLYRFIILFMGVISC 1088


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,386,012
Number of Sequences: 5004
Number of extensions: 27489
Number of successful extensions: 61
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)