Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_F24
         (319 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92775-3|CAB62778.2|  396|Caenorhabditis elegans Hypothetical pr...    26   5.1  
AF016656-4|AAB66039.3|  429|Caenorhabditis elegans Hypothetical ...    26   5.1  
AB070577-1|BAC66472.1|  396|Caenorhabditis elegans L-3,4-dihydro...    26   5.1  
Z49132-5|CAA88984.1|  396|Caenorhabditis elegans Hypothetical pr...    25   8.9  
AF078790-17|AAC26928.1|   89|Caenorhabditis elegans Hypothetical...    25   8.9  

>Z92775-3|CAB62778.2|  396|Caenorhabditis elegans Hypothetical
           protein C06H5.7 protein.
          Length = 396

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 271 KELPQPKMYKFTILFLVLACFIMAEAQLTFTSSW 170
           + L    +Y FTI+  V+ CF + +AQ  F++S+
Sbjct: 202 RNLMTASVYCFTIIVFVVTCFFIRKAQ-NFSNSF 234


>AF016656-4|AAB66039.3|  429|Caenorhabditis elegans Hypothetical
           protein C35A11.1 protein.
          Length = 429

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 156 LPSPALCPAGTMKPWRLFINLFRMKLKNSC 67
           L + A+C  GTM  + ++I  F ++  NSC
Sbjct: 71  LTAVAVCDIGTMASYLIYIIHFVLRRNNSC 100


>AB070577-1|BAC66472.1|  396|Caenorhabditis elegans
           L-3,4-dihydroxyphenylalanine receptorprotein.
          Length = 396

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 271 KELPQPKMYKFTILFLVLACFIMAEAQLTFTSSW 170
           + L    +Y FTI+  V+ CF + +AQ  F++S+
Sbjct: 202 RNLMTASVYCFTIIVFVVTCFFIRKAQ-NFSNSF 234


>Z49132-5|CAA88984.1|  396|Caenorhabditis elegans Hypothetical
           protein ZK666.5 protein.
          Length = 396

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 80  SFILNKFINRRQGFIVPA-GHSAGDGSPLSTPAGCESELGFGHYEASQN 223
           S++LN++ NR+  F++ +  + +G   PLS   G     G   ++  Q+
Sbjct: 274 SYLLNEYDNRKHNFVISSVKNFSGFHFPLSYHIGLNKVNGMWQWDQPQD 322


>AF078790-17|AAC26928.1|   89|Caenorhabditis elegans Hypothetical
           protein F36H12.1 protein.
          Length = 89

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
 Frame = -1

Query: 232 LFLVLACFI----MAEAQLTFTSSWGGKRAAI 149
           L++VL CF+    ++  Q+TFT  W  KRA +
Sbjct: 3   LYVVL-CFLVLLGLSAGQMTFTDQWTKKRATL 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,792,650
Number of Sequences: 27780
Number of extensions: 159018
Number of successful extensions: 335
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)