Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_F20
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.07c |||hypoxia induced family protein|Schizosaccharomyc...    39   3e-04
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    29   0.34 
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    26   1.8  
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc...    25   5.5  

>SPAC25B8.07c |||hypoxia induced family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 38.7 bits (86), Expect = 3e-04
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = -2

Query: 174 ASHHVETTREKFHRKFTENPFVPLGCLATAGALSMGLWSFRTGKTRLSQQMMRVRXLA 1
           AS    +  EK    F  NPF+PLGCL T G      +  R     ++ + MR R ++
Sbjct: 20  ASEESLSRSEKLKYVFVRNPFIPLGCLMTVGTFLASGYYIRRENHLMANKFMRYRVMS 77


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 28.7 bits (61), Expect = 0.34
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 222 PEPTDLHWVQLRKEMGASHHVETT-REKFHRKFTENPFVPL 103
           P P +    +L+  +G   H + T ++KF   FT +PFV L
Sbjct: 378 PPPRESEAWRLKSLVGVLRHADRTPKQKFKFSFTSDPFVKL 418


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 141 IFLLSFLHDEKLPFPCAVAPNVNPLVLVQLTFSSF 245
           ++L++ +    L  PCA+APN+  L++V+     F
Sbjct: 169 VYLVTLMIYIVLQIPCALAPNIACLLIVRFFCGCF 203


>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 349

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 159 LHDEKLPFPCAVAPNVNPL 215
           L D +LP+PC   P++N L
Sbjct: 257 LWDNRLPYPCKGLPSLNLL 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,527,360
Number of Sequences: 5004
Number of extensions: 28581
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)