Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_F20
         (394 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0124 + 12526572-12526689,12528205-12528392                       54   3e-08
07_03_1628 + 28236775-28237002,28237817-28237921,28239330-282394...    26   9.4  
03_01_0069 + 549787-549791,550033-550303,550405-552201                 26   9.4  

>09_03_0124 + 12526572-12526689,12528205-12528392
          Length = 101

 Score = 54.4 bits (125), Expect = 3e-08
 Identities = 24/45 (53%), Positives = 33/45 (73%)
 Frame = -2

Query: 135 RKFTENPFVPLGCLATAGALSMGLWSFRTGKTRLSQQMMRVRXLA 1
           +K  +NPFVP+G L TAG L+ GL SFR G ++L Q++MR R +A
Sbjct: 29  KKPVKNPFVPIGALVTAGVLTAGLISFRYGNSKLGQKLMRARVVA 73


>07_03_1628 +
           28236775-28237002,28237817-28237921,28239330-28239410,
           28240530-28240607,28241629-28241688,28241785-28242060,
           28243511-28243607,28243710-28243765
          Length = 326

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
 Frame = -2

Query: 258 RLISKTKKMSTEPEPTDLHWVQLRKEMGASHHVETTREKFHRKFTENPFVPLGC-LATAG 82
           R++++    +  P    LH V     M  S  V+T  + +HRK      +   C L    
Sbjct: 162 RIMTEAHLRAQTPSEISLHTVDQTVRMYVSTFVKTAEDTYHRKVDRATILSFLCALQGLA 221

Query: 81  ALSMGLWSFRTGKTRLSQ 28
           A+S  L+       R SQ
Sbjct: 222 AVSHILFEDALAFVRSSQ 239


>03_01_0069 + 549787-549791,550033-550303,550405-552201
          Length = 690

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 258 RLISKTKKMSTEPEPTDLHWVQLRKEMGASHHVETTREK 142
           R++S +++     E      V L+KE+ ASHH     E+
Sbjct: 225 RMVSSSQEAVKVVEELTAELVALKKELDASHHAHDEAEE 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,244,033
Number of Sequences: 37544
Number of extensions: 162896
Number of successful extensions: 342
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)