Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_F11
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...   153   2e-37
AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...   124   5e-29
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...   124   5e-29
Z77663-10|CAB01204.1|  543|Caenorhabditis elegans Hypothetical p...    34   0.12 
Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z70212-2|CAA94163.1|  430|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF067949-5|AAC19234.1|  109|Caenorhabditis elegans Synaptobrevin...    29   4.5  
AF003282-1|AAB61235.1|  109|Caenorhabditis elegans SNB-1 protein.      29   4.5  
AF003281-1|AAB61234.1|  109|Caenorhabditis elegans SNB-1 protein.      29   4.5  

>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score =  153 bits (370), Expect = 2e-37
 Identities = 75/133 (56%), Positives = 89/133 (66%)
 Frame = -3

Query: 650 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 471
           SKVSR++L E +  VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP 
Sbjct: 2   SKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPN 61

Query: 470 MQVCVLGDQQHCDEAKTXNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPR 291
           M+VCV GDQ H DEA   ++P M                          ASESLIKQIPR
Sbjct: 62  MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 121

Query: 290 LLGPGLNKAGKXP 252
           +LGPGLNKAGK P
Sbjct: 122 ILGPGLNKAGKFP 134



 Score =  124 bits (300), Expect = 5e-29
 Identities = 56/81 (69%), Positives = 69/81 (85%)
 Frame = -1

Query: 253 PGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLL 74
           P +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV +T +EL  N+ LSINFLVSLL
Sbjct: 134 PSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLL 193

Query: 73  KKHWQNVRSLHMKSTMGPPQR 11
           KK+WQNVRSL++KSTMG PQR
Sbjct: 194 KKNWQNVRSLNIKSTMGKPQR 214


>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score =  124 bits (300), Expect = 5e-29
 Identities = 56/81 (69%), Positives = 69/81 (85%)
 Frame = -1

Query: 253 PGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLL 74
           P +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV +T +EL  N+ LSINFLVSLL
Sbjct: 104 PSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLL 163

Query: 73  KKHWQNVRSLHMKSTMGPPQR 11
           KK+WQNVRSL++KSTMG PQR
Sbjct: 164 KKNWQNVRSLNIKSTMGKPQR 184



 Score =  112 bits (269), Expect = 3e-25
 Identities = 54/97 (55%), Positives = 62/97 (63%)
 Frame = -3

Query: 542 KNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTXNVPCMXXXXXXXXXXXXX 363
           KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DEA   ++P M             
Sbjct: 8   KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKK 67

Query: 362 XXXXXXXXXXXXXASESLIKQIPRLLGPGLNKAGKXP 252
                        ASESLIKQIPR+LGPGLNKAGK P
Sbjct: 68  LIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFP 104


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score =  124 bits (300), Expect = 5e-29
 Identities = 56/81 (69%), Positives = 69/81 (85%)
 Frame = -1

Query: 253 PGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLL 74
           P +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV +T +EL  N+ LSINFLVSLL
Sbjct: 73  PSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLL 132

Query: 73  KKHWQNVRSLHMKSTMGPPQR 11
           KK+WQNVRSL++KSTMG PQR
Sbjct: 133 KKNWQNVRSLNIKSTMGKPQR 153



 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 35/73 (47%), Positives = 39/73 (53%)
 Frame = -3

Query: 470 MQVCVLGDQQHCDEAKTXNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPR 291
           M+VCV GDQ H DEA   ++P M                          ASESLIKQIPR
Sbjct: 1   MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60

Query: 290 LLGPGLNKAGKXP 252
           +LGPGLNKAGK P
Sbjct: 61  ILGPGLNKAGKFP 73


>Z77663-10|CAB01204.1|  543|Caenorhabditis elegans Hypothetical
           protein F53F4.11 protein.
          Length = 543

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 16/75 (21%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
 Frame = -1

Query: 238 HQESMTQKIDEVKGTIKFQMKKVLCLS-VAVGHVDMTPDELAQNVHLSINFLVSLLKKHW 62
           +Q+ ++  I+    T+ + +++ +  S V VGH+  +  +L +N+   +  + S     +
Sbjct: 337 YQKPISTAIENALRTVVYPLRRYMVRSCVNVGHLGQSSADLKENIDTVLEKIASKCPGGF 396

Query: 61  QNVRSLHMKSTMGPP 17
            N+RS+++ ++ G P
Sbjct: 397 ANIRSIYLGASDGKP 411


>Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical
           protein C49F8.1 protein.
          Length = 407

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 160 SVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPP 17
           SV + H+ ++P+ L Q   L+  F  +     W+ +R   MKS +G P
Sbjct: 349 SVTIDHLRISPESLVQIARLAQAFGTN---PDWKKLRLADMKSALGTP 393


>AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical
           protein E02H9.4 protein.
          Length = 118

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 593 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYI 483
           K +K N  E VEL   +KNY P+ + R    V+ KY+
Sbjct: 41  KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKYL 77


>Z70212-2|CAA94163.1|  430|Caenorhabditis elegans Hypothetical
           protein R04D3.3 protein.
          Length = 430

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/66 (30%), Positives = 34/66 (51%)
 Frame = -3

Query: 710 PMLLQLPSVVIGGSLTNKMSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYD 531
           P +  + S V G S+ + ++S   +D+L E ++ + +S K K    LET+  Q G K  D
Sbjct: 180 PSIYHIGSQVGGSSMEDVLTSD-EKDSLSEAISNLPKSPKSKTDRDLETL-AQSGSKTRD 237

Query: 530 PQKDKR 513
               +R
Sbjct: 238 SHSRRR 243


>AF067949-5|AAC19234.1|  109|Caenorhabditis elegans Synaptobrevin
           related protein 1 protein.
          Length = 109

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -1

Query: 235 QESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKH-WQ 59
           Q++  Q +DEV G +K  ++KVL     +  +D   D L +          +L +K+ W+
Sbjct: 25  QQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQFEKSAATLKRKYWWK 83

Query: 58  NVRSL 44
           N++ +
Sbjct: 84  NIKMM 88


>AF003282-1|AAB61235.1|  109|Caenorhabditis elegans SNB-1 protein.
          Length = 109

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -1

Query: 235 QESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKH-WQ 59
           Q++  Q +DEV G +K  ++KVL     +  +D   D L +          +L +K+ W+
Sbjct: 25  QQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQFEKSAATLKRKYWWK 83

Query: 58  NVRSL 44
           N++ +
Sbjct: 84  NIKMM 88


>AF003281-1|AAB61234.1|  109|Caenorhabditis elegans SNB-1 protein.
          Length = 109

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -1

Query: 235 QESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKH-WQ 59
           Q++  Q +DEV G +K  ++KVL     +  +D   D L +          +L +K+ W+
Sbjct: 25  QQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQFEKSAATLKRKYWWK 83

Query: 58  NVRSL 44
           N++ +
Sbjct: 84  NIKMM 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,633,109
Number of Sequences: 27780
Number of extensions: 374952
Number of successful extensions: 988
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)