Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_F09
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    29   0.51 
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    28   1.2  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    28   1.5  
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p...    25   8.2  

>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
 Frame = +2

Query: 245 SISAQKNTF*VTASLLSSSTRNPINSISSGQRPNIQ--HTSTNIQVS*VTGGSIVTSKTF 418
           SIS   NTF + +S + SS    +   S+    + +   TS+++ V      S+VTS T 
Sbjct: 446 SISYTNNTF-IPSSSIKSSIVYSVTPTSAENYTSSEAFSTSSSLVVIPPVNSSLVTSSTS 504

Query: 419 VKR*SSLSKVYIRILQERMVNESDPYTLKTDKSKSLTGKQRIP 547
             + SSLS    ++  E   + S   +L   KS   T    IP
Sbjct: 505 FTKFSSLSS--SQLSTENFTSASSSLSLTNAKSSLSTPSTTIP 545


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +2

Query: 449 YIRILQERMVNESDPYTLKTDKSKSLTGKQRIPL 550
           YI  +Q+R  N+S  Y+L  +K KSL  + +IPL
Sbjct: 321 YITFVQDRNYNDSR-YSLNYEKIKSLGWRPQIPL 353


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -1

Query: 637  CYLNPIKFVYV*ILVVIHSYNEIVFTQVSK 548
            CY +P+  + +  L  ++ YN++ +TQ S+
Sbjct: 1038 CYSSPMFMILIVPLFFLYRYNQVYYTQTSR 1067


>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 392

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 121 QTSSSYY*FYILNTIRN-KHYKAMGNRF*YLHILMDSNFIVCFNLSTKKY 267
           +  +S + +Y    I N K+ +   N   Y+  LMD   IV  N S  KY
Sbjct: 21  ELGTSTFRYYFKGKIVNLKNKRVSSNEVCYMFKLMDDTGIVELNYSLSKY 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,554
Number of Sequences: 5004
Number of extensions: 63235
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)