Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_F02
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0967 - 23110154-23110240,23110620-23110673,23111010-231111... 45 5e-05
02_04_0092 + 19655747-19655825,19656362-19656567,19656990-196570... 45 5e-05
09_04_0371 - 17020539-17020607,17020697-17020747,17020888-170210... 44 1e-04
12_01_0343 + 2640822-2641106,2641488-2641556,2641708-2641887,264... 43 2e-04
08_02_0714 + 20343864-20344385,20344928-20345098,20345933-203459... 43 2e-04
08_02_0711 + 20305341-20305859,20306278-20306448,20306995-203070... 43 2e-04
08_02_0970 - 23140109-23140192,23140604-23140657,23140783-231407... 42 4e-04
08_02_0710 + 20275834-20276352,20276970-20277140,20277692-202777... 42 6e-04
11_01_0330 + 2472195-2472743 39 0.004
04_03_0863 + 20397161-20397239,20397464-20397672,20397768-203978... 38 0.009
03_02_0303 - 7261340-7261807 31 1.0
03_01_0317 + 2492030-2492591,2493189-2493249,2493951-2494066,249... 30 1.8
03_05_0807 + 27849637-27849823,27850002-27850294,27850736-278509... 29 4.2
10_01_0253 + 2661264-2661872,2662055-2662875,2662959-2663340 28 5.5
01_06_1391 + 36992276-36992476,36992609-36992794,36993215-369933... 28 5.5
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834... 27 9.7
03_05_0838 + 28093752-28094011,28095238-28095508,28095640-280958... 27 9.7
>08_02_0967 -
23110154-23110240,23110620-23110673,23111010-23111177,
23111432-23111534,23111664-23111988,23112091-23112181
Length = 275
Score = 45.2 bits (102), Expect = 5e-05
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = -2
Query: 464 FYTYKGSLTTPPCAEAVTWVIFSDYLPISVFQMDNFRGLLSNLNLPLVDNFRQLQPLFGR 285
+Y Y GSLTTPPC + V W I +S +Q+D R + + + +N R LQ + R
Sbjct: 206 YYRYMGSLTTPPCTQGVVWTIVKRVRTVSRYQLDLLREAVHD---EMENNARPLQAVNNR 262
Query: 284 RVFV 273
+ +
Sbjct: 263 DISI 266
>02_04_0092 +
19655747-19655825,19656362-19656567,19656990-19657096,
19657189-19657291,19657699-19657881,19657972-19658094
Length = 266
Score = 45.2 bits (102), Expect = 5e-05
Identities = 26/64 (40%), Positives = 33/64 (51%)
Frame = -2
Query: 470 ERFYTYKGSLTTPPCAEAVTWVIFSDYLPISVFQMDNFRGLLSNLNLPLVDNFRQLQPLF 291
+R++ Y GSLTTPPC E V W IF + I + L + L+ N R QPL
Sbjct: 201 DRYFRYVGSLTTPPCTENVIWNIFGE---IREMTKEQAAALRAPLHGSYRHNRRPTQPLN 257
Query: 290 GRRV 279
GR V
Sbjct: 258 GRTV 261
>09_04_0371 -
17020539-17020607,17020697-17020747,17020888-17021058,
17023296-17023404,17023570-17023676,17024429-17024640,
17024805-17024952
Length = 288
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/65 (41%), Positives = 31/65 (47%)
Frame = -2
Query: 473 TERFYTYKGSLTTPPCAEAVTWVIFSDYLPISVFQMDNFRGLLSNLNLPLVDNFRQLQPL 294
T +Y Y GSLTTPPC E V W I S S Q+D LL + + N R Q L
Sbjct: 223 TSGYYRYDGSLTTPPCTEGVIWTIMSKIGDASKEQID----LLKTVATTVEPNARPAQKL 278
Query: 293 FGRRV 279
R V
Sbjct: 279 NDRIV 283
>12_01_0343 +
2640822-2641106,2641488-2641556,2641708-2641887,
2642015-2642081,2643237-2644015
Length = 459
Score = 43.2 bits (97), Expect = 2e-04
Identities = 29/66 (43%), Positives = 34/66 (51%)
Frame = -2
Query: 473 TERFYTYKGSLTTPPCAEAVTWVIFSDYLPISVFQMDNFRGLLSNLNLPLVDNFRQLQPL 294
T ++ Y GSLTTPPC E V W + IS Q+ LL + LP D R QPL
Sbjct: 384 TGSYFRYGGSLTTPPCGENVVWSVLGKVREISQEQLH----LLMS-PLPTKD-ARPAQPL 437
Query: 293 FGRRVF 276
GR VF
Sbjct: 438 NGRAVF 443
>08_02_0714 +
20343864-20344385,20344928-20345098,20345933-20345986,
20346300-20346386
Length = 277
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/62 (37%), Positives = 31/62 (50%)
Frame = -2
Query: 464 FYTYKGSLTTPPCAEAVTWVIFSDYLPISVFQMDNFRGLLSNLNLPLVDNFRQLQPLFGR 285
+Y Y GSLTTPPC E V W I +S+ Q+ + + N N N R LQ + R
Sbjct: 208 YYRYMGSLTTPPCTEGVIWTIVRKVHTVSLSQLALLKAAVVNGN---EKNARPLQDVNNR 264
Query: 284 RV 279
+
Sbjct: 265 NI 266
>08_02_0711 +
20305341-20305859,20306278-20306448,20306995-20307048,
20307389-20307475
Length = 276
Score = 43.2 bits (97), Expect = 2e-04
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Frame = -2
Query: 626 ADVLAFXYQVVEFDAKLLSPIVKNLTAIENFNSTLQLPHTFSLSSILSGLDTERFYTYKG 447
A V+ Y + + L + + AI N ++ + ++ G DT +Y Y G
Sbjct: 154 AAVIGILYTIGTTPDEFLQKMEPYIIAISNQEGKEKMVVGGADPNVAKGKDTV-YYRYMG 212
Query: 446 SLTTPPCAEAVTWVIFSDYLPISVFQMDNFRG--LLSNLN--LPLVD-NFRQLQPLF 291
S TTPPC E V W + +S+ Q+ + L+ N N PL D N R++ F
Sbjct: 213 SFTTPPCTEGVIWTVVRKVHTVSLSQITLLKAAVLMGNENNARPLQDVNNREIDLFF 269
>08_02_0970 -
23140109-23140192,23140604-23140657,23140783-23140794,
23140842-23141009,23141371-23141473,23141574-23141680,
23143766-23143977,23144136-23144223
Length = 275
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = -2
Query: 464 FYTYKGSLTTPPCAEAVTWVIFSDYL----PISVFQMDNFRGLLSNLNLPLVDNFRQLQP 297
+Y Y GSLTTPPC E V W +F ++ +Q+D R +++ +N R LQ
Sbjct: 203 YYRYMGSLTTPPCTEGVIWTVFKRVFLLAQTVAQYQLDLLREAVAD---GYENNARPLQK 259
Query: 296 LFGRRVFVRI 267
+ R + + I
Sbjct: 260 VNNRNISIFI 269
>08_02_0710 +
20275834-20276352,20276970-20277140,20277692-20277745,
20277848-20277934
Length = 276
Score = 41.5 bits (93), Expect = 6e-04
Identities = 23/72 (31%), Positives = 35/72 (48%)
Frame = -2
Query: 494 SILSGLDTERFYTYKGSLTTPPCAEAVTWVIFSDYLPISVFQMDNFRGLLSNLNLPLVDN 315
++ G DT +Y Y GS TTPPC E V W + +S+ Q+ + + N +N
Sbjct: 198 NVAKGQDTV-YYRYMGSFTTPPCTEGVIWTVVRKVRTVSLSQITLLKAAVLTGN---ENN 253
Query: 314 FRQLQPLFGRRV 279
R LQ + R +
Sbjct: 254 ARPLQGVNNREI 265
>11_01_0330 + 2472195-2472743
Length = 182
Score = 38.7 bits (86), Expect = 0.004
Identities = 33/88 (37%), Positives = 39/88 (44%)
Frame = -2
Query: 542 ENFNSTLQLPHTFSLSSILSGLDTERFYTYKGSLTTPPCAEAVTWVIFSDYLPISVFQMD 363
EN L L H SL T ++ Y GSLT PPC E V W + IS Q+
Sbjct: 92 ENAQVALGLVHLRSLQK-----RTGSYFRYAGSLTAPPCTEDVFWSVLGKIRQISQEQV- 145
Query: 362 NFRGLLSNLNLPLVDNFRQLQPLFGRRV 279
L++ L LP R QPL GR V
Sbjct: 146 ---ALITAL-LP-AGGARPTQPLNGRTV 168
>04_03_0863 +
20397161-20397239,20397464-20397672,20397768-20397874,
20397996-20398098,20398236-20398412,20398549-20398704
Length = 276
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -2
Query: 464 FYTYKGSLTTPPCAEAVTWVI 402
+Y Y GSLTTPPCAE V W I
Sbjct: 202 YYRYVGSLTTPPCAENVIWNI 222
>03_02_0303 - 7261340-7261807
Length = 155
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -3
Query: 289 VAVSSSESHQRTLSSRRPNSTTPNGTGLD 203
V V S ES +R L +RPN + NG G D
Sbjct: 24 VFVPSPESFRRVLKLQRPNDSATNGNGAD 52
>03_01_0317 +
2492030-2492591,2493189-2493249,2493951-2494066,
2494662-2495176
Length = 417
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = -2
Query: 299 PLFGRRVFVRITSKNPKFKKT----KLHYSKWD 213
PL R+ F + +P+F +T LHYSKWD
Sbjct: 280 PLPHRKYFQTVLCNSPEFNRTVVNHDLHYSKWD 312
>03_05_0807 +
27849637-27849823,27850002-27850294,27850736-27850973,
27851075-27851410,27851496-27851581,27851678-27851785,
27851878-27852185,27852265-27852528,27852610-27853381
Length = 863
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = -2
Query: 611 FXYQVVEFDAKLLS----PIVKNLTAIENFNSTLQLPHTFSLSSILSGL 477
F Q+VE ++K+L+ P++KN NF TL P+T G+
Sbjct: 804 FSRQLVEIESKVLNMNKDPLLKNRVGPANFPYTLMFPNTSDNKGAAEGI 852
>10_01_0253 + 2661264-2661872,2662055-2662875,2662959-2663340
Length = 603
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 268 SHQRTLSSRRPNSTTPNGTGLDTRSPKMTSST 173
S TL+ R P + PNG G+ +P + T
Sbjct: 533 SSNETLAEREPKTEVPNGGGISAAAPLSSDET 564
>01_06_1391 +
36992276-36992476,36992609-36992794,36993215-36993327,
36993504-36993687,36993799-36993900
Length = 261
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 524 LQLPHTFSLSSILSGLDTERFYTYKGSLT 438
L LP++FS +LSG+ + FY + GS T
Sbjct: 73 LTLPYSFSQLGMLSGVLLQLFYGFMGSWT 101
>05_05_0039 -
21782093-21782320,21782383-21782754,21783031-21783496,
21784896-21784993,21785179-21785362,21785462-21785574,
21785942-21786127,21786191-21786364
Length = 606
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 524 LQLPHTFSLSSILSGLDTERFYTYKGSLT 438
L LP++FS +LSGL + FY GS T
Sbjct: 64 LTLPYSFSQLGMLSGLLLQVFYGLMGSWT 92
>03_05_0838 +
28093752-28094011,28095238-28095508,28095640-28095810,
28096238-28096369
Length = 277
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +3
Query: 123 YYLSVVIGYIYIYLFIE---VDDVIFGLLVSNPVPFGVVEFGLL 245
Y + ++GY IY+F++ + IF L++ + FGVV+ G+L
Sbjct: 97 YQANFILGYCSIYIFMQTFMIPGTIFMSLLAGAL-FGVVKGGIL 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,936,915
Number of Sequences: 37544
Number of extensions: 352801
Number of successful extensions: 813
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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