Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_E23
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po...    27   3.8  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    26   5.0  

>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 458

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 3/102 (2%)
 Frame = -3

Query: 411 ISPDMKLGRAEVITRSGSVALATVYDKLGRLTFGYCYL---HGLFYLVFHYNYIKHNLFR 241
           I+PD K+  A      G + +  VY K  R +    +    +G FY   H NY K   FR
Sbjct: 353 IAPDAKMFPA-ASNDDGLIDVVIVYSKQFRKSLLSMFTQLDNGGFYYSKHLNYYKVRSFR 411

Query: 240 CEDSKIGMLNTLLLTGVIVILWPRLLVINPERSNMATPLLXY 115
                 G  +   L G    L P    + P+     +P+  +
Sbjct: 412 FTPVNTGKRHYFALDGESYPLEPFECRVAPKLGTTLSPVAGF 453


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -3

Query: 300 LHGLFYLVFH--YNYIKHNLFRCEDSKI 223
           LH  FYL+FH  +N +K +  R   S+I
Sbjct: 118 LHSSFYLLFHEPFNILKGSTLRFSQSRI 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,812,769
Number of Sequences: 5004
Number of extensions: 54219
Number of successful extensions: 138
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)