Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_E23
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0707 + 19645471-19646112                                         31   1.3  
06_01_0492 - 3531640-3531735,3531841-3531895,3532164-3532592,353...    29   5.2  
11_01_0377 + 2877530-2878577,2878721-2878803                           28   9.1  
03_06_0069 - 31449319-31450368                                         28   9.1  

>09_04_0707 + 19645471-19646112
          Length = 213

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 162 RATGARG*QL-LPLKAVYSACLSYYLHTETNYVLYNYSEILN 284
           R+  ARG QL LP+K +Y++ +   LH+     LY  S++L+
Sbjct: 26  RSRDARGRQLALPIKLLYTSTMPVVLHSAAVSSLYTVSQLLH 67


>06_01_0492 -
           3531640-3531735,3531841-3531895,3532164-3532592,
           3532677-3532756
          Length = 219

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 149 NAPIWPLHSXLXHFHAGVRQSAPRR 75
           N P WP H  L H+   + +SAP R
Sbjct: 3   NLPTWPRHRQLLHWALDLHESAPCR 27


>11_01_0377 + 2877530-2878577,2878721-2878803
          Length = 376

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -3

Query: 378 VITRSGSVALATVYDKLGRLTFGYCYLHGLFYLVFHYNYIKHNLFRCEDS 229
           V T  GS++ ATV   L  ++ G C++  L+ ++     + H+ F   D+
Sbjct: 243 VFTEMGSISTATVIIVLAEVSIGTCFISYLWSILLSVGLL-HDTFVSHDT 291


>03_06_0069 - 31449319-31450368
          Length = 349

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 314 NVSRPNLSYTVASATLPLLVITSARPSFMS 403
           N  RP   Y VA+A+LP     ++ PS +S
Sbjct: 270 NAGRPQAPYDVATASLPCTTAVTSLPSALS 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,467,852
Number of Sequences: 37544
Number of extensions: 322812
Number of successful extensions: 714
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)