Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_E22
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces pombe...    34   0.019
SPBP19A11.01 |||glycine decarboxylase complex subunit H|Schizosa...    27   2.2  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   2.9  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    26   6.7  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   8.9  
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    25   8.9  

>SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 104

 Score = 34.3 bits (75), Expect = 0.019
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -3

Query: 759 LVDCHLNHPFRKFIGYCNDYDRDMRKCLKAERLQRQKANLDESRQR 622
           L +CH +  F KF G CN    +++ CL  +R  + + N + +R R
Sbjct: 20  LEECHKS--FGKFFGECNTIKYELKACLTKDRNDKARLNRENARMR 63


>SPBP19A11.01 |||glycine decarboxylase complex subunit
           H|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 169

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/63 (28%), Positives = 33/63 (52%)
 Frame = -2

Query: 214 SDESVFEVPCCMKGTLVEVNEELVQNPLLLKNMPDSDGFIAIMLASIAISEATKSELLTH 35
           S +S  +V   + GT+  +NE L  +P  + + P+ +G+I  +   ++  +  KS LL  
Sbjct: 99  SVKSASDVYSPVSGTVTSINESLGDSPDKVSSSPEEEGWICKI--KLSSPDELKS-LLND 155

Query: 34  EEY 26
           E Y
Sbjct: 156 ESY 158


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +3

Query: 375  NNAIRFE*NIIIISLFFMPSTLIKYR--FEKYLSVKVFKLSKSGIESKMLKSIVFIITKL 548
            N A+RF+ ++I I   F+PS  ++    + K L  K +K  K G+  K L S+   I ++
Sbjct: 1077 NMALRFQRDLIEIFELFVPSVTLRNNPSYIKELKEKEYKRLK-GVIEKCLSSVASRINQI 1135


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 756 VDCHLNHPFRKFIGYCNDYDRDMRKCLKAERLQRQK 649
           +D  ++HP+ K  GY +   RD R   KAE   R++
Sbjct: 270 IDQIISHPYFKENGYHSSSIRDPRPSSKAEEKVRKR 305


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 702 YDRDMRKCLKAERLQRQKANL 640
           YDR +R C+KA   Q+Q+ ++
Sbjct: 718 YDRLIRNCIKAHNKQQQRRSI 738


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
 Frame = +3

Query: 408 IISLFFMPSTLIKYRFEKYLSV----KVFKLSKS-GIESKMLKSIVF--IITKLCFLI*I 566
           ++S+F +P     +RF   LS+      F ++ + G+++    +  F  +  ++ + +  
Sbjct: 44  LVSIFSLPQKQTYHRFFSILSLVSCLAYFTMACNYGLKNVFSSASFFREVSVRMVYYV-R 102

Query: 567 YISWLLRFGLKFVLEYW 617
           YI WL+ F L  V+ +W
Sbjct: 103 YIQWLINFPLIIVMLHW 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,652
Number of Sequences: 5004
Number of extensions: 56143
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)