Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_E21
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    28   1.6  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   2.8  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    26   4.9  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    26   4.9  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   8.5  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 337  LPEPKAVYPDATPALPEDAEKKPPRLGSR 251
            +P P A+ P  TP LP  + + PP   +R
Sbjct: 1040 VPSPSALSPSVTPQLPPVSSRLPPVSATR 1068


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = -1

Query: 436 VFDQCMLENLNLP---RPGFGYFCEARVHDTKRPKPLPEPKAVYPDATPALPE 287
           V D  +   +NLP    P  GYF     + +  P P+  P A Y  A+  + E
Sbjct: 218 VADLLIPAGVNLPGAQEPNRGYFSPMHTYSSAVPGPISVPSAPYGRASSTIAE 270


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 136 MSDFYSNSKFYNWQHSIVSL*HVGGV 213
           M +FY +SK  +W+  IVS  H+ G+
Sbjct: 515 MQNFYQDSKSNHWEAQIVSY-HISGL 539


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +2

Query: 515 SQAGLLHLLEELQCTGSDR--LTLVDTFSRIILF 610
           ++  LL L E+L C+ +DR  LTL D  SR+++F
Sbjct: 640 NRLSLLQLNEQLSCSPADRAKLTLFDP-SRLLIF 672


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 454 CRKTQGVFDQCMLENLNLPRPGFGYFCEARVHDTKR 347
           C+K +  F Q +LEN N P P   +  E  +HD ++
Sbjct: 735 CKKIRE-FVQLLLENPNYPLPKDDHELEDMIHDEQQ 769


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 340 PLPEPKAVYPDATPALPEDAEKKPP 266
           P+P P ++ P A P+LP  A    P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLP 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,964
Number of Sequences: 5004
Number of extensions: 50683
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)